Vibrio rotiferianus: BSZ04_16625
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Entry
BSZ04_16625 CDS
T05115
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vro
Vibrio rotiferianus
Brite
KEGG Orthology (KO) [BR:
vro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vro03019
]
BSZ04_16625
Enzymes [BR:
vro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BSZ04_16625
Messenger RNA biogenesis [BR:
vro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BSZ04_16625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_19
ResIII
HA2_N
AAA_22
nSTAND3
T2SSE
ABC_tran
NACHT
SLFN-g3_helicase
PhoH
AAA_30
TsaE
Zeta_toxin
NTPase_1
AAA_25
NTPase_P4
DUF4680
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ASI96575
LinkDB
All DBs
Position
2:complement(1646648..1650685)
Genome browser
AA seq
1345 aa
AA seq
DB search
MKRIGNALTSSQPPKKNPAEEQATPSNGAQNAKAKQANASQAQASQNAAPQAQVNNAASL
RKALNQCMMCDRFRLSKRISGASKIKKDAARNAVFDEIALDIAKSMMVVEQRSSYKPTIE
YPEILPVSQKRDDIAKAIEENQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRR
LAARSVANRIAEEMETKLGEFVGYKVRFNDQISENTQIKLMTDGILLAEIQHDRFLNQYD
TIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSKHFNNAPIIEVSGR
TYPVETRYRPLSGDDDNDRDQLEGIFEAVDELCDEGLGDILIFMNGEREIRDTADALSKR
NLKSTEIVPLYARLSAGEQNKIFQPHAGRRIVLATNVAETSLTVPGIKYVIDPGTARISR
YSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICIRLYSEEDFESRPEFTDPEILRTNL
ASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLLEELGAINSDAKESKKRLTSIGRQL
ARLPIDPRLARMVLESPKQGALKEVMIIAAALSIQDPRERPSDKQQSSDDKHKRFFHEDS
DFLTFVNLWDYIQKQQKALTGNQFRKQCKQDYLNYLRVREWQDVYFQIHQSMREMEFKLN
DEPASYHGVHSSILVGLLSHIGMKDQEKNEYQGARNARFHIFPASGLFKKQPKWIMSAEL
VETSKLWGRIIAKIQPEWIEPLAKHLIKRSYSEPHWSKKRAAVLAHEKVMLYGVPIVPKR
LVNYGSIDPTVSRELFIRSALVEGEWETKHAFFKQNRKLLQEVEELEHKSRRRDILVDDD
ELFDFYDQRVGTEVVSGKHFDTWWKKASKDNKELLNFEKEMLFKGDASHVTDLDYPNFWY
QNNLKLKLSYQFEPGDDSDGVTVHLPLPILNQVETAGFDWQIPGLRHELIVSLIKSLPKT
IRKNFVPAPNYADAFLARSTPMEAPLLDSLEKELRRMTGVEVLREDWNMDQIPEHLKVTF
RAVDHRNRKLKENKDLHELKESLKDKVQETLSKVADDDIEQQGLHTWSFGELPKVYQQKR
GGYDVKAYPAIVDSKDSVEIKLYETEYEQVTAMQAGQRRLILLNVPSPIKYLHSNLPNKS
KLGLYFNPYGKVLDLIDDCIACGVDKLIEEQGGLVWEPEKFDALKEHVRAELGDTVVEIA
QQVETILTTAFNINKKLKGKIDFTMAFALSDIKAQVEGLIFKGFATECGWKRLPDILRYM
RAIERRMEKLPIDPNKDRLHMLKVESVTSDYKELLNKIPKGMVIPENVKEIRWMLEELRV
SFFAQQLGTPYPVSDKRVKNAIDAC
NT seq
4038 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaataggaaacgctttgacttcgtcacagcccccaaaaaagaatcccgctgaa
gagcaagcgacaccgtcaaatggtgcgcaaaatgccaaagcgaagcaggctaatgcatct
caagcacaagcttctcagaatgctgcgcctcaggctcaagtaaataacgcggcgtcacta
cgcaaggcacttaaccagtgcatgatgtgtgaccgcttccgcttgagtaaacgaatctct
ggtgcaagcaaaatcaaaaaagacgcagcacgtaacgctgtgtttgatgaaatcgcatta
gacatcgccaaatccatgatggttgtggagcaacgcagtagctacaaaccaacgattgaa
taccctgaaattctgccagtcagccaaaaacgcgacgacattgcgaaagcgatcgaagaa
aaccaagtggttatcgttgcaggtgaaaccggttcaggtaaaaccactcagctaccaaaa
atctgtgctgagcttggtcgcggtaaattcggtctgataggtcatacgcagcctcgtcgc
cttgcggcgcgttcggttgcgaaccgtattgccgaagagatggaaaccaagcttggtgag
tttgttggttacaaggttcgattcaacgatcagatctctgaaaatacccaaatcaaattg
atgacggacggtatcttgctggctgaaattcagcatgaccgtttcttgaatcaatacgac
accatcattatcgatgaagcgcacgagcgcagcctgaacatcgatttcatcttgggttac
ttgaaagagttgctaccacgtcgtcctgatctgaaagtgatcatcacgtcggcaaccatc
gaccctgagcgtttttcaaagcacttcaacaacgctccaatcattgaagtgtcaggtcgt
acttacccagtagaaacccgttaccgcccactaagtggtgatgacgataatgatcgtgac
caacttgaaggtatcttcgaagcggtagacgaactgtgcgatgaaggtttaggtgacatc
ctgatcttcatgaacggtgagcgtgaaatccgtgataccgctgatgcactgtctaaacgt
aatctgaagagcacggaaattgtgccgctttacgcgcgtttgtcggcgggtgaacagaac
aagattttccaacctcatgcaggtcgtcgaattgtactggcaaccaacgtagcggaaacc
tcgttgacggttccgggcatcaaatacgttatcgatccgggtacggcgcgtatcagccga
tacagttaccgtactaaggttcagcgtcttccaatcgagccagtttctcaggcgagtgcg
aaccagcgtaaaggtcgttgtggtcgtgtggaagagggtatctgtatccgtctgtactca
gaggaagattttgagtcacgtccggagtttaccgatcctgagatcctgcgtaccaaccta
gcgtcggttatcttacagatgacggcacttggtctgggcgacattcaagccttcccattt
gtggaagcgcctgacaaacgtaacattcaagacggtgttcgccttctagaagagttgggt
gcaatcaattctgatgcgaaagaatcgaagaaacgcctaaccagcattggtcgtcaactt
gcacgtcttccaatcgacccacgtttagcacgtatggtattggaatcaccaaagcaaggc
gcactgaaagaagtgatgatcatcgcggcggcattgtcgattcaagacccgcgagagcgt
ccaagtgacaagcagcaatcatcagatgacaagcacaaacgtttcttccatgaagactca
gattttctgacgtttgtgaacctgtgggattacatccagaagcagcaaaaagcgctgacg
ggtaatcagttccgcaagcaatgtaaacaagattacttgaactacttgcgcgtgcgtgag
tggcaagatgtgtacttccaaattcatcagtcgatgcgtgaaatggaattcaaactgaac
gatgagcctgcgtcttaccatggcgtacatagttcaatcctagtcggtttgttgtcacac
attggtatgaaagaccaagagaagaatgaataccaaggcgcgcgtaacgctcgtttccat
atcttccctgcatcgggtctattcaagaaacaacctaagtggatcatgtctgctgaactg
gtggaaacctcaaaactttggggtcgtatcatcgccaagattcaaccagagtggattgaa
ccgttagcgaagcacctaattaagcgcagctacagcgagccgcattggtcgaagaaacgt
gcagcagtcttggcgcacgagaaagtgatgctttacggtgtgccaattgtaccgaagcgt
ttggtgaactacggcagtattgatccaaccgtcagtcgtgagctattcattcgtagcgcg
ctggtggaaggcgagtgggaaaccaaacacgcgttcttcaagcaaaatcgtaagcttctt
caagaagtggaagagcttgaacacaaatctcgtcgccgtgacatcttggtggatgacgat
gagttgttcgatttctacgaccaacgtgttggtactgaagtcgtttctggcaaacacttc
gatacgtggtggaagaaagcatcgaaagacaacaaagaactgctgaacttcgagaaagag
atgttgttcaagggcgatgctagccatgttaccgatttggattatccgaatttctggtat
caaaataacttgaaactaaagctgagctatcagtttgagccgggcgatgacagtgacggt
gtcacggttcatttgccgttgccgattttaaaccaagtggaaacagctggttttgattgg
cagatccctgggttgcgtcatgaacttattgtgagtttgattaaatcgctaccgaagaca
attcgtaagaactttgttcctgcgccaaactacgctgatgcatttttagcacgttctaca
ccaatggaagcgccattacttgactcgttagagaaagagttacgacgcatgaccggtgtg
gaagttctgcgcgaagattggaatatggatcaaattccggaacacttaaaggtgactttc
cgcgcggttgaccatagaaatcgcaagttgaaggaaaataaagaccttcatgaattgaaa
gagagcttgaaagataaagttcaagaaacgctttcaaaagtagcggatgacgacatcgag
caacaaggtttgcacacgtggagctttggtgagctgccgaaggtgtaccaacaaaaacgt
ggcggttacgacgttaaagcgtacccggcgattgtggattccaaagacagtgttgaaatc
aagctgtacgaaactgagtatgaacaggttacagccatgcaagcaggtcagcgtcgtttg
atcttgttgaatgtgccgtcaccaatcaaatacctgcactccaacttaccaaacaagtcg
aagttgggtctgtactttaacccttacggcaaggtgctggatctgattgatgactgtatc
gcgtgtggtgtcgataagcttatcgaagagcagggtggtttggtttgggagcctgagaaa
tttgatgccttgaaagaacacgttcgtgctgagcttggtgatacggtggtggaaattgcg
cagcaagtagaaaccattctaacgaccgccttcaacatcaataagaagttgaaaggtaag
atcgacttcaccatggcgtttgctctatcggacatcaaagcccaagttgaagggttgatc
ttcaaaggcttcgcgacagagtgtggctggaaacgtctaccagacattctgcgttacatg
cgcgcaattgagcgtcgtatggagaagctgccgatcgatccaaacaaagaccgtttacat
atgctgaaagttgagtctgttactagcgactacaaagagttgcttaacaagatcccgaaa
ggcatggtgattccggagaacgtaaaagagatccgttggatgctcgaagagcttcgagtg
agcttctttgctcaacaattaggcactccgtatccggtttctgataaacgtgtcaaaaat
gcgattgatgcttgctaa
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