Vibrio rotiferianus: BSZ04_20930
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Entry
BSZ04_20930 CDS
T05115
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vro
Vibrio rotiferianus
Pathway
vro03410
Base excision repair
vro03430
Mismatch repair
vro03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BSZ04_20930
03430 Mismatch repair
BSZ04_20930
03440 Homologous recombination
BSZ04_20930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vro03400
]
BSZ04_20930
DNA repair and recombination proteins [BR:
vro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BSZ04_20930
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BSZ04_20930
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BSZ04_20930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ASI98046
LinkDB
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Position
2:complement(2605166..2606905)
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AA seq
579 aa
AA seq
DB search
MIEIQRRPEPDLSLLPDSIPSILKRIYLNRGITDIAQLETSARGLHSYQQLGGIDKAVEL
LFQAINEQKRIIVVGDFDADGATSSALSVLALRMLGSNNVDYLVPNRFEDGYGLSPEVVD
QALELGAEMIMTVDNGVSSIEGVRYAKENGITVLVTDHHLPGQVLPDVDAMVNPNLDSCA
FPSKALAGVGVAFYLMMALCVYMRKQNWFAQQGMQEPKLMELIDLVALGTVADVVPLDEN
NRILVHQGLQRIRAGKARPGIQALIEVAKRDARRLVASDFGFALGPRINAAGRLDDMSFG
VELLMCNNIHAARRMASELDGLNQTRKEIEEGMKQEAMAFCERLQFGENTELPYGLALFQ
RDWHQGVIGILASRIKEKYHRPVIAFADGGEGTIKGSCRSIPGLHMRDALDFIDTQNPGL
IIKFGGHAMAAGLTIKEQDFERFSRLFDEVVKKELDEAALKGVILSDGELKPEEFSMHVA
EQLRAGGPFGQAFPEPIFDGEFKVLHQKLVGEKHLKLMLEPLYKGHPTNVMIDGIAFNID
LRRWPDASVKTVRLAYKLDVNEFRGNQSLQLMVDYIEAK
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaattcaacgacgtcccgaaccggacctttctcttcttcccgattccattcct
tctattcttaagcgtatctatctcaaccgtggtatcacggatatcgcacagttagaaacc
tctgcacgtggtttgcattcttaccaacagcttggcggtatagataaagcggttgaactg
cttttccaagcgatcaatgagcaaaagcggattatcgttgttggtgattttgatgccgat
ggcgcgaccagctcagcgttgtcggtacttgcactacgtatgcttggcagcaataacgtc
gattacttggtgccaaaccgctttgaagatggttatggattgagtccggaagtggtggat
caagcgttagagcttggtgctgaaatgatcatgacagttgataatggcgtgtcgtcgatt
gaaggtgttcgttacgcaaaagaaaatggcattaccgtgctggtgactgaccaccactta
ccggggcaagtactcccagacgtcgatgccatggtgaacccaaacctagacagctgtgct
ttcccatcgaaagcgttggcaggggtgggggtggctttctatctgatgatggcgctgtgt
gtatacatgcgcaaacagaattggtttgcgcagcaaggcatgcaagagcctaagttgatg
gagctgatcgacttggttgcccttggtactgtggcagacgtcgtgccactagatgaaaac
aaccgcattcttgtgcatcaaggcttacagcgtattcgtgcaggtaaagcacgcccgggc
attcaagccttgattgaagtcgcgaaacgcgatgcgcgtcgtttagttgcgtcggatttt
ggttttgcactgggtccacgtattaacgctgcaggtcgtttggatgatatgtcatttggt
gttgaactgctgatgtgtaacaacatccatgctgcacgccgcatggcgagtgagttggat
ggcctcaaccaaacccgtaaagaaatagaagaaggcatgaagcaagaagcgatggctttt
tgtgagcgtcttcagtttggtgaaaacaccgaactcccttatggcttagccttgtttcaa
agagactggcaccaaggtgtgataggtattcttgcttcgcgaataaaagagaagtaccac
cgtcccgttattgcgttcgcggatggaggggaaggaactatcaaaggctcttgccgttca
attcctgggctgcacatgcgtgacgcgttggactttatcgatacgcaaaaccctggcttg
atcatcaaatttggtggtcacgcgatggcggcgggcttaaccatcaaagagcaagacttt
gagcgttttagccgtttgtttgatgaagtggttaaaaaagagttggatgaagcggcgttg
aaaggtgtgatcctatctgatggtgagttgaaaccggaagaattttcgatgcatgtcgct
gagcaacttcgtgcaggtggtccgtttggtcaagcgtttcctgaacctatctttgatggt
gagttcaaagttctgcaccagaaactggtgggtgagaaacatcttaagttgatgttagaa
ccgctttataaaggccacccaaccaacgtaatgatcgacggtattgccttcaatattgat
ttacgtcgttggccggatgcatcagtaaaaacagtacgccttgcgtataagttggatgtg
aatgaatttagaggtaatcaatcacttcagttgatggttgattatatcgaagccaagtaa
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