Vibrio rotiferianus: BSZ04_23745
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Entry
BSZ04_23745 CDS
T05115
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vro
Vibrio rotiferianus
Pathway
vro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSZ04_23745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vro03019
]
BSZ04_23745
03400 DNA repair and recombination proteins [BR:
vro03400
]
BSZ04_23745
Enzymes [BR:
vro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSZ04_23745
Messenger RNA biogenesis [BR:
vro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSZ04_23745
DNA repair and recombination proteins [BR:
vro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BSZ04_23745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ASI97858
LinkDB
All DBs
Position
2:3194480..3196315
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AA seq
611 aa
AA seq
DB search
MTSTLLAEQSDSPVTPQRVLEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCY
QIPALVRSGIALVISPLISLMKDQVDQLKANGVAAECINSTMPREELLSVYNRMHTGHLK
LVYVSPERVLMRDFIERLENLPLSMIAVDEAHCISQWGHDFRPEYAALGQLKQQFSHVPF
MALTATADDATRRDILERLQLNNPEVYLGSFDRPNIRYNLVEKHKPVSQIVRYLETQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFG
MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDD
GPQKQVETHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPCGNCDICLDPPKHFDATEEAR
KALSCVYRVNQSFGMGYVVEVLRGMQNIRVRENGHDKISTYAIGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDVTLELAVPRLDTAARAAKSDKLTSKNYDKKLF
AKLRKLRKSIADEDGLPPYVVFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFL
DLIQEHITHHG
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgacctctaccttgttagccgaacaatcagactcgcctgtaacgcctcaacgtgtgttg
gaggatgtgtttggttaccaagagttccgtgatggtcagcagttggtgattgatgctgcg
gtagaaggtcgcgacagcttagttatcctgcctactggtggcggtaagtcgctgtgttat
caaattcctgctttggttcgctctggcattgctttggtcatttctccgcttatctcgctg
atgaaggaccaagtggaccagcttaaagccaacggtgtagcggctgagtgtattaactcg
accatgcctcgtgaggagctgctcagcgtgtataaccgcatgcacacaggtcatcttaag
ttggtgtacgtctcgccagaacgcgtattgatgcgtgatttcattgagcgcttggaaaac
ctgccgttatcgatgattgctgtcgatgaagcgcactgtatttcccaatggggacacgac
ttccgtccagaatatgccgcgcttggtcaacttaagcagcagttttcccatgtgccattt
atggcgctgacggcgacggcggatgacgcaacgcgtcgagatattcttgagcgtctgcaa
ctgaataatccagaggtttatctaggtagcttcgaccgtcctaacattcgttacaactta
gttgagaagcacaagccggtttcgcaaatcgttcgttatcttgaaactcaaaaaggtaat
tgcggcatcatttattgtggtagccgtaagaaagttgagatggtgactgagaagctgtgc
aacaaccatattcgtgctgctggttatcatgctggtatggatgctgatgagcgcgcttac
gttcaagaagccttccaacgtgatgacatccaaatcgtggtggcgactgtggcattcggt
atgggcatcaacaaaccaaacgtgcgctttgtggttcactttgatatcccgcgcaatatc
gagtcctactatcaggaaaccggtcgtgcagggcgtgatggtttacctgcggaagcgatg
atgttgtatgacccggcggacatcagttggctgcgtcgtatgttggatgaaaaagacgat
ggtccacagaagcaggtggaaacccataagctgaatgcgatgagtgcctttgctgaggcg
cagacttgtcgtcgtcaggtgctattgaattattttggtgagtatcgcgagaagccatgt
ggcaactgcgatatttgcttagatccaccgaaacactttgatgccacggaagaagcacgt
aaggcgttgtcttgtgtgtaccgagtgaatcagagctttggtatgggctacgtagtggaa
gtgctacgtggcatgcaaaacattcgtgtacgtgaaaacgggcacgataagatttctacc
tacgcgatagggcgtgatcacagccacgattactgggtgagtatcttccgtcagttaatc
cataaaggactgttgttccaaaacatcacgcgtaactcaacgctgcaacttactgaagag
gcgcgtccgctgctgcgtggcgatgtgactctggagttagcggttccacgcttagacacc
gcagcacgtgcggctaaatcagataaactgaccagcaagaactacgacaaaaagctgttt
gctaagttacgtaagctgcgtaagtcgattgctgatgaagatggtttgccaccatacgtg
gtcttcagtgacgcgactctgattgatatggcggaaattctgccaacgtcttacggcgaa
atgctggcagttagcggtgttggtcagcgcaaactggagaagtacgccgacccattcctc
gatttgattcaagaacacattactcaccatggataa
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