Vibrio rotiferianus: BSZ04_23765
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Entry
BSZ04_23765 CDS
T05115
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vro
Vibrio rotiferianus
Pathway
vro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSZ04_23765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vro03019
]
BSZ04_23765
Enzymes [BR:
vro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BSZ04_23765
Messenger RNA biogenesis [BR:
vro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSZ04_23765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ASI97862
LinkDB
All DBs
Position
2:complement(3199257..3200570)
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AA seq
437 aa
AA seq
DB search
MKKTHITEQKFADLGLNPQITEGLEKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKT
LAFLTATFNHLLTKPEHEGRKPTQPRAIIMAPTRELAIQIFNDAEPLIASTGLKAALAYG
GESYDKQLSKLQDGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEPKERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSN
EDKMALLQTLIEEEWPDRAIVFANTKHKCESIWGHLAADGHRVGLLTGDVPQKKREKILE
QFTRGEVDLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFA
CEDYAINLPPIEEYIEHAIPVSDYDASALIQDLPAPLRMRAPRTQQRRTNTGGTRSGNRK
PQGRRPRQPRQSAPKQS
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcatatcacagagcaaaagttcgccgatttgggattaaatccacaaatt
actgaaggtttggagaaaaaagggttcgaattttgtaccccaattcaagccttggcgttg
ccggtactgctcaccggccaagacattgcaggccaggcccaaacgggtactggtaagacg
cttgcgtttcttactgctacctttaaccacctattgactaaacctgagcatgaaggtcgt
aagccaactcaaccgcgtgctatcatcatggcaccaacccgtgagctagcgattcagatc
tttaatgatgcggaacctttgattgcgagtacaggtcttaaagctgccttagcttacggt
ggcgaaagctacgataagcaactatcgaagcttcaagacggtgtagatatcctgattggt
acgactggtcgtattatcgatttctacaaacagcgcgtattcaacctaaacaacattcaa
gctgttgtactcgatgaagccgaccgtatgtttgaccttggctttattaaagacattcgt
ttcttgttccgccgtatgccagaaccaaaagagcgtttgaacatgctgttctcagcgacg
ctttcttaccgcgttcaagagctggcattcgaacacatgcacaacccagagcacgttgtg
gttgagccagaacaaaaaaccggtcatcgcatccaagaagagcttttctacccttcgaac
gaagacaagatggcactgcttcaaaccctgattgaagaagaatggccagatcgcgcgatc
gtttttgccaacactaagcacaagtgtgaatcgatttggggtcacctcgcagcagatggc
caccgtgttggtctactgactggcgatgtaccgcagaagaagcgtgaaaagattcttgag
caattcactcgcggtgaagttgacctattagtagcaactgacgttgcagcacgcggtcta
cacatccctcaagtaacacacgtatttaacttcgatctgcctgatgactgtgaagattac
gttcaccgtatcggtcgtacgggccgtgccggcgcaagtggtcactctatcagcttcgct
tgtgaagattacgcaatcaacttgccaccaatcgaagaatacattgagcacgcaatccca
gtttctgattacgacgcttcggctctaatccaagatctgcctgcaccacttcgtatgcgc
gcgcctcgtactcaacaacgtcgcaccaatacaggtggcactcgctctggtaaccgcaag
ccgcaaggacgtcgtcctcgtcaaccgcgtcaatcagcgccaaaacaatcataa
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