Vreelandella sp. SM1641: V8F66_02180
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Entry
V8F66_02180 CDS
T11229
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
vrs Vreelandella sp. SM1641
Pathway
vrs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vrs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
V8F66_02180 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vrs03400
]
V8F66_02180 (sbcB)
Enzymes [BR:
vrs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
V8F66_02180 (sbcB)
DNA repair and recombination proteins [BR:
vrs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
V8F66_02180 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
V8F66_02180 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
V8F66_02180 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
HTH_20
Motif
Other DBs
NCBI-ProteinID:
XBY59310
UniProt:
A0AAU7XP40
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All DBs
Position
454267..455760
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AA seq
497 aa
AA seq
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MAPPNAASASFLWHDYETFGADPRRDRPAQFAALRTDADLNEIGEPIELYCKPADDYLPH
PAACLITGITPQKAQRHGLPEAEFAGDIQRHMSEPGTCVVGYNSLRFDDEVSRHLFYRNL
LDPYSREWQNGNSRWDLIDVVRAFYALRPTGIEWPLREDGAPSFKLEHLTAANGIAHEGA
HDAVADVRATIALARLLKERNAKLFDYLLGLRGKRAVAKQLDLPNAKPLLHISRRYPASR
GCSALVMPLAEHPTNPNGVIVYDLSVDPGDMLSMSVEQIRGRVFVSQQDLAEGDVRIPLK
VIHINRCPVVFPASALKDVDGPQKGEYGSIVERLGLDVTACRQHWKTLRDASGVAEKVAE
VFNAGYEDAPQDPDLMLYSGSFFSAADRQQMERVREMEPWDLVGQRFAFQDPRLEEMLFR
FRARSYPDTLEGEEREQWEAYRWMRINDPALAGFTLKAFAREIAQYNQQTLTDRERQILE
ELVMFVEAMMPAQAFDA
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggcgccacccaatgctgcctctgccagttttctttggcatgattatgaaaccttcggg
gctgacccgcgtcgcgaccggcccgcacagtttgccgcgctgcgcactgatgccgatctc
aatgagattggtgagcccattgagctttattgcaaaccggccgatgactatttaccccat
cctgcggcctgtttgattaccggcattaccccccaaaaagcccagcgccatggtctcccc
gaagctgaattcgcgggagatattcagcgccatatgagtgagccaggcacctgcgtagtc
ggctacaacagcctgcgctttgatgacgaagtgtcccgccacctgttttaccgcaatctg
ctcgacccttattcccgcgagtggcaaaacggcaattcccgctgggatttgattgatgtg
gtgcgcgctttttatgcgttgcgccctacgggcatcgagtggccgctgcgtgaagatggc
gcacccagttttaagcttgagcacttaacggcagcgaacggcattgcccatgaaggagct
catgacgcagtggccgatgtgcgcgcaacaatcgccttggcgcgtcttctcaaagagcgc
aatgcgaagctgtttgattacttgctcggcctgcgcggtaagcgtgcggtggctaaacag
ctcgacttgcccaatgccaaaccgctactgcatatttcccgccgttatcccgctagccgt
ggctgtagcgccctggtgatgccgttggctgaacacccgaccaaccccaacggggtcatc
gtttacgacttaagcgttgatcccggcgatatgcttagtatgtcggtggaacagattcgt
ggccgtgtgtttgtaagccagcaagatttggcagaaggcgatgtacgcattccgctgaaa
gtgattcatatcaaccgctgcccggtggtctttcctgccagtgccttaaaagatgttgat
gggccgcaaaaaggtgagtatggctctatcgttgagcgtttaggcttggatgtgacggcc
tgtcggcagcattggaaaaccctacgtgatgccagcggtgtggctgagaaggtcgcagag
gtatttaacgcaggctatgaagatgcgccgcaagaccctgatctaatgctctattctggc
agcttcttttccgccgctgaccgccagcagatggagcgtgtgcgtgaaatggagccgtgg
gacttggtggggcagcgttttgcgttccaagatccacgcttggaagagatgctgtttcgc
tttcgtgcgcgtagctaccccgacaccttggaaggcgaagagcgtgagcagtgggaggcg
tatcgctggatgcgcattaatgaccctgcgctagcgggctttactttaaaggcgtttgcg
cgggagatcgctcagtacaatcagcaaacgcttactgatcgcgagcggcagattctggaa
gaactggtcatgttcgtcgaagccatgatgccagctcaggcgtttgacgcctga
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