Vreelandella sp. SM1641: V8F66_05980
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Entry
V8F66_05980 CDS
T11229
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vrs Vreelandella sp. SM1641
Brite
KEGG Orthology (KO) [BR:
vrs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vrs03016
]
V8F66_05980
Enzymes [BR:
vrs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
V8F66_05980
Transfer RNA biogenesis [BR:
vrs03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
V8F66_05980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
DUF1822
Motif
Other DBs
NCBI-ProteinID:
XBY60033
UniProt:
A0AAU7XQH6
LinkDB
All DBs
Position
complement(1284002..1285942)
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AA seq
646 aa
AA seq
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MLQNNAMLAQLKQQIRQTTPRAEGVIKATDKGFGFLETDDGESYFVPPPAMKLVLHGDRV
EAVIHENGDKKSVEPEKLIEAGLDRFVSRVQKREGRLSVVPDHPSIKNVIKARIKNSLDE
DTIADGDWVVARLVRHPLKADDRAFFAQIDELVAKSDDPAVPWRVTLARHALEQECPDAG
TDWPLMDEGLTREDLTSTPFFTIDGEKTRDMDDALHVAPRAEGGWQLSVAIADPTAYVEE
GHAADLEARTRAFTVYLPGQNVTMLPEQLADDLCSLWEGKDRPALACTLNINADGSLGEY
RFFAANVKSHAKLVYDNVSDWIEGQGDWAPTDEIAEQLTALRDLTEARTAWRNEHALVFK
DRPDYVFDLDPAGNVLAVRTEERRIANRMIEESMIVANACCADFLAQHIGHGIFNVHRAF
EPEKAEAAQEFLAGQEIVVEREALTELARYTELKRALESRDDAWLDARLRRFQGFTMMSA
QPGPHFGLGLAAYATWTSPIRKYGDMVNHRLIKRVLKGEQAPAEATQQLTEQLTERRRLN
RMAERDVKDWLYVRYLTPAAQNQDTFEAEIMAINRGGMRVRLLENGATAFVPAPLMHSDR
SKVVIDDKEGRIQIEGEERYKLGDPLRVILTEAREETRSLVAKPAV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcttcagaataacgccatgcttgcccagctcaagcaacagattcgtcaaaccaccccc
cgtgctgaaggggtgatcaaagccaccgacaaaggtttcggatttctcgaaactgacgac
ggtgaatcctatttcgtgccgccgcccgccatgaagttagtgcttcatggtgatcgtgtg
gaagcggttatccacgagaacggtgacaaaaaatccgttgagcctgaaaagctgattgaa
gcggggctggatcggtttgtttcccgcgtgcagaagcgcgaaggccgcctgtccgtcgta
cccgaccatccgtcgattaaaaatgtgatcaaggcacggattaagaacagccttgatgaa
gacaccattgctgacggcgactgggtcgttgcccgcttggtgcgtcatccgctaaaagcc
gatgaccgcgctttctttgcccagattgatgagctggtcgctaaaagtgatgatccggcg
gtaccatggcgcgtcacgcttgcccgccatgcgctggagcaagagtgccccgatgcaggc
accgactggccgctgatggatgaaggcctgactcgcgaagatttaacttctacgcccttc
ttcaccatcgatggtgagaagacccgcgatatggacgatgcgctgcacgtggcacctcgc
gctgaaggcggttggcagttgagtgtcgcgattgccgaccccaccgcttatgtggaagag
ggccatgcggctgatttagaagcccgcacccgtgctttcaccgtttacctgcccggtcag
aacgtcaccatgctgcccgagcagctagcggatgatctctgctcgctatgggaaggcaag
gatcgccccgcgctggcctgtacgctgaatatcaatgccgacggcagcctgggcgagtat
cgtttttttgcggcgaacgttaagtctcacgccaagcttgtttatgacaacgtctccgac
tggatcgaaggtcaaggcgactgggcgcccacagatgagattgccgagcagctcaccgcg
ctgcgtgatttgaccgaggcacgtaccgcctggcgcaacgaacacgcgttggtgtttaaa
gaccgccctgactacgtgtttgatctcgatcccgctggcaacgtattggccgtgcgcacc
gaagagcgccgcattgccaaccgcatgatcgaagagtcgatgattgtggctaacgcctgc
tgcgcggatttcctggcccagcatatcggtcacggtatctttaacgtgcatcgcgccttc
gagccagagaaagccgaagctgcccaggaattcctggcaggccaggagattgtggtcgaa
cgcgaagcgctgactgagcttgcccgctacaccgagctgaagcgtgcactggaaagccgc
gacgacgcttggctggatgcgcgcctacgccgcttccagggcttcaccatgatgtccgca
cagcctggcccgcactttggtttgggtctggccgcctacgccacctggacctcgccaatc
cgtaagtatggcgatatggtcaaccaccgcctgatcaaacgcgtgctgaaaggcgaacag
gcgcccgccgaagctacccagcagctcaccgagcagttgacggagcgtcgccgcctgaat
cgtatggccgagcgcgatgtgaaagattggctctacgtgcgctacctaacacccgccgcg
cagaaccaggatacgtttgaggccgaaatcatggccatcaaccgtggcggtatgcgcgtt
cgtctgctggaaaatggcgcgaccgcctttgttccagcccctttaatgcacagtgaccgc
agcaaagtggtgattgatgataaagagggacgtatccagatagaaggcgaagagcgttac
aagctaggcgacccgcttcgcgtcatcttgaccgaagcccgcgaagagacccgctcgctg
gtagcaaagccagcagtttag
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