Vreelandella sp. SM1641: V8F66_08570
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Entry
V8F66_08570 CDS
T11229
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vrs Vreelandella sp. SM1641
Pathway
vrs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vrs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V8F66_08570 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vrs03019
]
V8F66_08570 (rne)
03009 Ribosome biogenesis [BR:
vrs03009
]
V8F66_08570 (rne)
Enzymes [BR:
vrs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
V8F66_08570 (rne)
Messenger RNA biogenesis [BR:
vrs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
V8F66_08570 (rne)
Ribosome biogenesis [BR:
vrs03009
]
Prokaryotic type
rRNA processing factors
V8F66_08570 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XBY60516
UniProt:
A0AAU7XS85
LinkDB
All DBs
Position
complement(1852777..1855986)
Genome browser
AA seq
1069 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDY
GADRHGFLPLKEISKEYFVKDVSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFVSL
AGRFLVLMPNNPRAGGISRRIEGDERSQLKDAMGQLTVPDKMGLIVRTAGIGRNPEELQW
DLDYLVQVWESITTEAAKRPAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSPEIHAEALG
FIRQVMPSYQQKIKLYADEVPLFSRFQIESQIETAYQREVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNSEAADEIARQLRLRDIGGLVVIDFIDMGPARNQREVENRM
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSLSLSI
MRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQNVRVVLLPNPDMDTPHY
DVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEPTPSFVPPAQRAEAAVKSVTHNAPAPAS
LQTEEKAPAAAPAVKAAPATSEQPSVIGRFIRGFAKLLGSDESNAEAAPEPKTETPAPRK
PSERKTNQRSSESRQKPSRNERGDNTSRSESRSGSDNSARSEPKTEQKAEQKSEQRTTAP
RPAGDDNSDKRSGPSRTRNRRRHPQQDDATEESANKAPRKESQSDSSGKDSSKKSNNGKS
AAPKEPRREAGQDSQPDETAKQPEAKQDDGKPKRTRNNPRNRTRTQAINPQAEAEQLKLQ
AEVVDEAPETAEPADEAPVAPTTEASDAKTSAPEVEAPASERPASEAPTAETQNDDVAAS
ADEATQPASDTAEQEAAAKPVTSEEPAPAAASETTEPHSEESKTTSVPPEVNSEAIETNS
EPSETEQTADNQPSASESVAPEAIEPPAANAVDPAATIEEAAAEPLSSADTDQSSEQRQP
EASTNAQEIRQEAVTPSISESASERDDAASSVEEPSSSEQKQGEEEKSVEHSGELETTEV
EPQPAQPVASEAPAEDAATEETPKPRRRTRAHNDPREKRKQAQQDTHSE
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgcttattaatgcgacacagcctgaagagctgcgcgtcgccttagtcgat
ggacaacgcctgtacgatttagacatcgaatccggcgctcgagaacagaaaaaagccaat
atctatcgcggtaaaatcacccgcgtagagccctcacttgaagctgcctttgtcgattat
ggcgctgaccgccacggctttttgccgctcaaagagatctctaaagagtactttgtaaaa
gacgtttccggccgtcccagcattaaagaagtgcttaaagagggccaagaggtcatcgtt
caggtcgacaaggaagagcgtggcaataaaggcgccgcgcttaccacctttgtcagcctg
gcgggccgctttttggtattgatgcccaacaacccgcgtgcgggtggcatttctcgccgt
atcgaaggcgatgagcgtagtcagctcaaagatgccatgggtcaattgaccgtgccggac
aaaatgggcctgatcgtgcgcaccgctggcattggccgtaacccggaagagctgcagtgg
gatttggactatctggttcaggtgtgggaatcgatcaccactgaagccgccaagcgccct
gccccattcctaatctaccgtgaatccaacgtcatcattcgcgctatgcgcgactacttg
cgccaggacatcggcgaagtattgatcgacagccccgagattcacgccgaagcgctaggc
tttattcgccaggtaatgccctcgtatcagcagaagatcaagctttacgctgacgaggta
ccgctgttctcgcgctttcagatcgaatcgcaaatcgaaacggcctatcagcgtgaagta
aaactcccatctggcgggtcgatcgtgatcgaccacacggaagcgctggtttctatcgat
atcaactccgcgcgtgctacccgcggtagcgatatcgaagaaaccgccctacaaaccaac
tccgaagccgccgatgagatcgcccgccagctacgcctgcgcgatatcggcggcttggtg
gtaatcgacttcatcgacatggggccagcgcgcaaccagcgtgaagttgaaaaccgtatg
cgcgatgcgcttaagctagaccgcgcgcgggtgcagattggtcgcatctcacgctttggc
ctaatggaaatgtcccgacagcgcctgcgtccttcgctgggtgaaaccagcggcgtggtt
tgcccgcgctgtaatggtcaaggcaccattcgcgatgtgcgttcgctgtcgctgtcaatc
atgcgcctgattgaagaagaggccatgaaagagaacagcgcgcagattcgcgctattctg
ccggtacccgtcgctacgtatctgctcaatgaaaaacgcagtgtgctggccgatttagag
tcccgccaaaatgttcgcgtagtgctgctgcctaaccctgacatggatacgccccactac
gacgtacagcgcctgcgcgatgatcatttagacgaggatgacactcaaagcctttcgagc
tttgagctctccacggataccgaagtaggtaaggagccgacacccagcttcgtaccgccc
gctcaacgcgcagaagcagcggtaaaaagcgttacgcataacgcccccgcgccggcatcg
ctgcaaaccgaagagaaagcgcctgctgctgccccggcggtgaaagcagcaccggcgacc
agcgagcaacccagcgtcattggccgctttatccgtggcttcgccaagttgctaggcagc
gacgaaagtaatgctgaagctgcgccagagcccaagactgaaaccccggcgccgcgcaag
ccaagcgagcgtaaaaccaatcagcgcagcagtgagtcgcggcagaagccctcacgcaat
gagcgcggcgacaacactagccgtagcgagtcgcgcagcggcagcgataacagcgcccgg
tctgagccaaaaactgaacaaaaagccgagcaaaaaagcgagcaacgcaccactgctccg
cgtcctgccggtgacgataacagcgacaagcgcagcggccccagccgcacccgcaatcgt
cgtcgtcatccccagcaagacgatgccaccgaagagtcggccaacaaagcgcctcgtaaa
gagagccagtcggatagctctggcaaagacagctctaaaaagagcaataacggcaaaagc
gcagcgccgaaagagccacgtcgcgaggctggccaagacagccaacccgatgaaactgcc
aaacagccagaagccaagcaggatgacggcaagccgaagcgtacgcgtaacaacccgcgt
aaccgcacacgtacccaggcgatcaacccacaggcagaagccgagcagttaaagctgcag
gcagaagtggtagatgaagcgccagaaaccgctgaacctgcggatgaagcgcctgtcgcg
ccaacaaccgaagcgtcagacgcgaaaacttcggcaccggaagtagaagcaccagcttca
gagagaccggcttcagaagcaccaactgccgagactcagaatgatgacgtcgccgcatct
gccgatgaagccactcaacctgcttctgacaccgctgagcaggaagccgctgccaagccc
gtcaccagcgaagagcccgcacctgctgctgcctctgaaacgactgaacctcattctgaa
gagagtaagactacgtcagtgccacctgaggtgaactcagaagcaatcgaaaccaactcg
gagccttctgaaactgagcaaactgctgataaccagccaagtgctagcgaatcggtagca
cctgaagctatcgaaccgcctgcggccaacgcggtcgatccggcggccactattgaagaa
gctgccgctgagcctctcagtagcgctgacacggatcaaagcagcgaacagcgccagcct
gaagcgtcaactaacgcccaggaaattcgccaggaagcagtaacaccaagcatttctgag
agcgcttctgagcgtgacgacgcggcctcttcagttgaagagccatccagcagcgagcaa
aagcaaggcgaggaagaaaagagcgtcgaacatagcggcgaactagaaacgactgaagta
gagcctcagcctgctcagccggtggctagcgaagctcccgctgaagatgcagcaactgaa
gaaacgcctaaaccacgtcgccgcacacgggctcacaacgatccgcgtgaaaagcgtaaa
caggcgcaacaggacacccactccgagtaa
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