Vreelandella sp. SM1641: V8F66_12195
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Entry
V8F66_12195 CDS
T11229
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vrs Vreelandella sp. SM1641
Pathway
vrs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vrs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
V8F66_12195 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vrs03400
]
V8F66_12195 (mfd)
Enzymes [BR:
vrs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V8F66_12195 (mfd)
DNA repair and recombination proteins [BR:
vrs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
V8F66_12195 (mfd)
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XBY57081
UniProt:
A0AAU7XJK8
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Position
2624455..2627904
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AA seq
1149 aa
AA seq
DB search
MPTFSLLPPPQPQGTRDTLYWLSPPGSATALALSRVAQHAPLLVITPNTASAQRLEQDLY
FYSDVPVLPFPDWETLPYDSFSPHQDIVSARLRTLRQLQDGVRGIVLVPINTLMQRLPPV
EYIAGRVMTLKTGERLNREAFRESLSRAGYRAVETVYEPGEYAMRGALIDLFAMGMDEPI
RIDLFDDEIDTLRHFDPGSQRSTDKLESLELLPAHEYSLSRSAIACFREQFETLFDVDPR
QCPLYNDALKGIPSPGLEHYLPLFFEQTASLFEHLTDDTRVALLPGVFDAAEQHWQSIDA
RYVNLGVDPTRPLLPPHRAFFPVSDVFAAIKARPRIELTEDSEQRHAYLPEAAPLPTLSI
NARAKQPLGELTTFLKSHAKTRVLFVAESRGRREALEEILAPLKLSLPHTDSFHDFLASD
HTYAITEGLVDSGLWLNNPSVAVISETELFGDVVRQSRRREKATDDNELAVRHLSELREG
APVVHQAHGVGRYLGLETLEAGGQANEFLALSYADGAKLYVPVDSLHMISRYSGAGDELA
PLHKLGSDQWEKARRKAAEKIRDTAAELLDVYARREAQQGVVYEAPGEEYVRFASNFPFE
ETPDQHAAIEAVISDMTSPQPMDRVVCGDVGFGKTEVAMRAAFIAVQSGRQVVVLVPTTL
LARQHFENFRDRFADTAVNIGLISRFTSGKEVTQTLESVKNGQTDIVIGTHKLLSKSVEL
PKMGLLIIDEEHRFGVAQKEKLKTLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPP
ARRLSVKTFVQQHDASIIKEALLREILRGGQVYVLHNEVKTIENSAEKIRELIPEARVAV
AHGQLPERSLERIMSDFYHRRFNVLVCSTIIETGIDVPSANTIIIERADKFGLAQLHQLR
GRVGRSHHQAYAYLLTPPPKAMTRDAIKRLEAISASDDLGAGFTLASHDMEIRGAGELLG
DEQSGQMETIGYTLYMEMLDRAVKAIRAGKTPNIDAPFNTGVEINLNLPALIPSDYIHDV
QQRLVMYKRIANTQSDSELTELQVELIDRFGLLPNPLKNLIRQTKLRHRAEQLGISKIEA
GESRGRVLFDSSTQVDPLTLVTLIQTSPKHFRLEGSDTLRFELSMENVDQRFQQLENLLS
TLNQKVAAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgccgactttctctctgctcccccccccccagcctcaagggactcgcgatacgctctac
tggttatcgccaccgggcagcgcgactgccctggctctttcacgcgtggcccagcacgcc
ccgctattggtgatcacccccaatacggccagtgcgcagcgtctggagcaagacctctac
ttttatagcgacgttccggtacttcctttccccgattgggaaacgctgccctacgacagc
ttttcaccccatcaggacatcgtctcggcgcggctacgcactctgcgccagcttcaggat
ggggtacgcggcattgtattggtgccaatcaatacgctgatgcaacgcttaccaccggtc
gaatatattgccgggcgggtaatgacactcaaaactggcgagcgattaaatcgcgaagcg
ttccgagaatcactttcgcgagcgggttatcgcgccgtggagacggtgtatgaacccggc
gaatacgccatgcgtggggcattgatcgacctatttgcaatgggcatggatgaaccgatt
cgcatcgatctgtttgacgacgagatcgacacgctgcgtcacttcgaccccggcagccag
cgctcaaccgataaacttgagtcgctagagttgctgcccgcccacgagtactcattgagc
cgaagtgccatcgcctgctttcgtgagcagtttgaaaccctctttgatgtcgatccgcgc
cagtgccccctctataacgatgcattaaagggcattccttcaccgggtctggagcactat
ctaccgctgtttttcgagcagaccgcttcgctgtttgaacacctgaccgacgatacccgg
gtagccctactgcctggcgtttttgatgccgccgagcagcactggcaatccattgacgcc
cgctacgttaacctgggcgtcgacccgacccgaccactgctgcctcctcaccgagcgttt
ttcccggtcagtgatgtttttgcggctataaaagcacgcccgcgcattgagctcactgag
gatagcgaacagcgccatgcgtatctgccagaagcagcaccgctgcctacactctctatc
aatgcccgcgctaagcagccgctgggcgaactgactacatttttgaagtcgcatgctaaa
acccgagtgctgtttgtcgcggaatcacgaggccgccgcgaagcgctggaagagatattg
gcgccgcttaagctctcgctcccgcataccgatagctttcacgactttctcgccagtgat
cacacctatgccattaccgaaggcttggtggacagcggcctgtggctgaacaacccaagc
gttgcggtgatcagtgaaacagagctgtttggcgatgtggtacgtcaaagccgtcggcgc
gaaaaagccaccgatgataacgagctagcggttcgtcacttgtcagagctgcgcgaaggc
gcgccggtggttcaccaagcccatggcgttgggcgctatttaggtctggaaacgctggag
gccggcggtcaggccaatgagtttttagcactctcctacgccgatggcgctaaactttat
gtgcccgtcgacagcctgcacatgatttcacgctacagcggtgccggtgacgaactggcg
ccgctgcataaattgggttccgatcagtgggaaaaagcccgccgcaaagccgctgagaag
attcgtgacactgccgccgaacttttggatgtttacgctcgcagggaagctcaacagggc
gtggtctacgaagcgccaggcgaggagtatgtgcgttttgcgagtaacttcccattcgaa
gaaacgcccgaccagcatgcggccattgaagcggtaatcagcgacatgacgtcgccgcag
cccatggatcgcgtggtatgtggtgacgtaggcttcggcaaaactgaagtggccatgcgc
gcggcatttatcgccgtgcaatcaggtcgccaagtagtggtcctggtgcctaccacgctg
ctggcgcgccagcatttcgagaatttccgcgaccgttttgccgacaccgccgtcaatatt
ggcttgatctctcgcttcaccagcggcaaagaggttacccaaacattagagagtgttaaa
aacggccaaaccgatatcgtgattggcacccataaactgctctctaaaagcgttgagcta
cccaaaatgggactccttatcattgatgaggagcaccgctttggggtagcgcaaaaagag
aaactcaaaacgctgcgcgctgaagtcgatattttgaccctgaccgcgacgcctattccg
cgcacgctgaatatggccatgagcggtatccgcgatttgtcgattatcgctacgccaccc
gcacgacgcctgtcggtcaaaacgtttgttcagcaacatgatgccagtatcattaaagaa
gccctactgcgcgagatactgcgtggcgggcaggtgtatgtgctgcataacgaagtcaaa
accatcgaaaacagtgccgaaaaaattcgtgagctgattcctgaagcgcgggtggcagtt
gcccacggccaactgcctgagcgcagcctcgaacgcatcatgtcggacttctatcatcgc
cgttttaacgtgctggtatgctcgaccattattgaaactggtattgatgtgcctagcgcc
aatactattattatcgaacgcgccgataaatttggcttggcacagcttcaccagttacgg
ggccgtgttggccgtagccaccaccaggcttatgcttacctgctgacaccgccccctaaa
gcgatgacccgtgatgccatcaaacgcctggaagccattagcgcttcggacgatctaggt
gctggtttcaccctggccagccacgacatggagattcgcggagcaggcgagctactgggg
gatgaacagagcggccagatggaaaccattggctatacactttacatggagatgcttgac
cgggcagtgaaggccattcgtgcgggcaaaacacccaatatcgacgcgcccttcaatacc
ggcgtggaaatcaacctcaacctgcccgcgctgattccaagtgattatattcatgatgtt
cagcagcgcctggtgatgtacaagcggattgccaacacccagagcgatagcgaacttaca
gagttacaggttgagctaattgaccgctttggcttgctgcccaatccgttgaaaaacctg
attcgccagaccaagctgcgccaccgtgccgagcaattaggcatcagcaaaatcgaggct
ggcgagagccgcggtagagtactgtttgatagcagcacccaggtggatcccttaaccctg
gtgaccctcattcagacgtcaccaaagcacttccgtttagagggctctgacaccttacga
tttgaattatcaatggaaaacgtcgaccaacgctttcaacagcttgaaaacctacttagt
acgcttaatcaaaaagtagcggcggcgtga
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