Vibrio ruber: RND59_01380
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Entry
RND59_01380 CDS
T09542
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
vru
Vibrio ruber
Pathway
vru03030
DNA replication
vru03430
Mismatch repair
vru03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RND59_01380 (holA)
03430 Mismatch repair
RND59_01380 (holA)
03440 Homologous recombination
RND59_01380 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vru03032
]
RND59_01380 (holA)
03400 DNA repair and recombination proteins [BR:
vru03400
]
RND59_01380 (holA)
Enzymes [BR:
vru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RND59_01380 (holA)
DNA replication proteins [BR:
vru03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RND59_01380 (holA)
DNA repair and recombination proteins [BR:
vru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RND59_01380 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delt_C
DNA_pol3_delta
DNA_pol3_delta_C
DNA_pol3_gamma3
DUF6946
Motif
Other DBs
NCBI-ProteinID:
WNJ95801
LinkDB
All DBs
Position
1:288075..289100
Genome browser
AA seq
341 aa
AA seq
DB search
MRIFAEKLPEHLQHQLMPVYLLFGNEPLLLQESRLSIAQKAKAQGFTEIYRYQADSTLDW
QQVFDHFQAFSLFSNQQLVELTLPDGNMNAQLTGQLLALGDMLHPDTILVVIGNKLTKAQ
ENTKWFKALATQGCLVNCLTPDLNRLPQFVMQRCRKLKLTPDPEALQMLAQWHEGNLLAL
AQSLEKLALLYPDGQLTLIRVEASLSRHNHFTVYNWTDALLDGKSNRCQRILRQLEAEGT
EPVLLLRSVQKELRLLTTLHAQQQDASLHTLMDKHRIWKNKRSLYVNALNRLSADQLYML
IQTLSHIELSVKTRYDVNPWPLLQAFSLKFTQAGLTPALPD
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatatttgcggaaaaattgccggaacatcttcaacatcaattgatgcctgtttat
ctcctattcggaaatgaaccgttattattgcaagaatcccggctctcaattgctcagaaa
gccaaagcacaaggatttactgaaatctaccgctatcaggcggacagtacactggactgg
cagcaagtctttgatcattttcaggcgtttagtctgttttcaaaccagcaattggtcgag
ttgacactcccggacggcaatatgaacgcccaattaacgggacagctgctggcgctggga
gatatgctacatccggatacgattctggtggtgatcggcaataaactcaccaaagcacaa
gaaaacaccaaatggtttaaagcactagccacacaaggttgtctggtcaactgcctgaca
ccggacctcaaccgtctgccgcaatttgtcatgcaacgctgccggaagctgaaactgact
cccgacccggaagccttacaaatgttggcacaatggcatgagggaaatctgctggcgctt
gctcagagcctggaaaaactagcgctactctatccggatggtcagctgacactaatccga
gtcgaagcttccctgtcccggcataaccatttcaccgtctacaactggacggatgcttta
ctggacggcaaatccaaccgttgtcagcgcattttgcgtcagctcgaagccgaagggact
gaaccggtattactgttacgttcagtgcagaaagaattgcgtttactgactacccttcat
gcgcaacagcaagacgcatcgctgcatacactgatggataaacatcgaatctggaaaaat
aagcgttcgctgtatgtgaatgcattaaaccgactcagtgcagatcaactatacatgctg
atccaaaccttaagtcatattgaactgtcagtaaaaacgcgttatgacgtcaatccgtgg
ccgttactgcaagcattcagcttgaaatttacccaagccggtttgacacccgctttgcct
gattga
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