Vibrio ruber: RND59_02905
Help
Entry
RND59_02905 CDS
T09542
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
vru
Vibrio ruber
Brite
KEGG Orthology (KO) [BR:
vru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vru03009
]
RND59_02905 (srmB)
Enzymes [BR:
vru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RND59_02905 (srmB)
Ribosome biogenesis [BR:
vru03009
]
Prokaryotic type
rRNA helicases
RND59_02905 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_RecD
Helicase_C_2
Utp25_C
AAA_22
Cas3-like_C_2
UMPH-1
Motif
Other DBs
NCBI-ProteinID:
WNJ97013
LinkDB
All DBs
Position
1:641804..643048
Genome browser
AA seq
414 aa
AA seq
DB search
MIKNFSDLELDPCLLEAIEKAGFTRPTQVQAESIPYALDGRDVMACAPTGTGKTAAFGLP
AIQYLIDFPRKKPGPARVLVLTPTRELAIQVAEQIQTLAQLTHLKIVTITGGVQYQQHAD
LLNATQDIVVATPGRLMEYIEAERFDCRAIEWLILDEADRMLDMGFAPTVNRLSSECRWR
KQTLLFSATLEGKGVDGFAEDLLSDPAEVRADPPRRERKKITQWYHRADSLAHKNELLKE
ILTTQSQRAIVFVKTRDRLAELRSELERSQIPCAWIQGEMPQERRNNAINRFREGEINIL
LATDVAARGLDISDISHVINYDLPRTADVFLHRIGRTARAGKKGIAISLVEAHDQPMIER
IQRYMSEEIKERFIDGLRPKHKKPVFKKKKSPAKKKAATKDKKVVKKKTAKKKK
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
gtgattaaaaatttttcagacttagaattagatccctgtcttcttgaagccatagaaaaa
gcaggatttactcgcccgacacaagttcaggccgagtccattccctacgctttagacggt
cgggatgtcatggcttgtgccccgacagggacaggaaaaaccgcagcgtttggtctgccc
gcaattcagtatttaatcgacttcccgcgcaagaaaccggggccggcccgagtgctggtc
ctcaccccaacccgtgaactcgcgattcaggtcgcggaacagatccagacgctggctcaa
ctgacccacctgaaaatcgtgacgataaccggtggtgttcaatatcagcaacatgccgac
ctgctcaatgcgacccaagatattgtggtcgcgactcccggtcggttaatggaatatatt
gaagccgagcgttttgattgtcgcgccatcgaatggttgattctggatgaagcggatcga
atgctggatatggggtttgcaccaaccgtgaatcgtctttcctctgaatgtcgctggcgt
aaacaaaccttgctgttctctgccaccctcgaagggaaaggcgttgatgggtttgcggaa
gatcttttaagcgacccggcagaagtccgtgcggatcccccgcgccgggaaagaaagaaa
atcacccagtggtatcaccgggcagatagcttagctcataaaaatgagctgcttaaagag
atcctgaccacgcagtctcagcgagccatcgtcttcgtcaaaacccgtgatcgactggca
gaattacgttcagaactagagcgcagccagatcccctgtgcctggattcaaggcgaaatg
ccgcaagaacggcgtaacaatgcaattaaccgatttcgggaaggtgagatcaacattttg
ctggccaccgatgttgccgcccgtggtttagacatttcagatatcagccatgtgatcaac
tatgatctcccacgaactgcagatgtattcctgcaccgaatcggccgtaccgcccgagcc
ggtaaaaaagggattgccatttctctggttgaagcgcatgaccaaccgatgatcgaacga
attcagcgttacatgagcgaagagatcaaagaacggtttattgacggactgcggccgaaa
cataaaaagccagtcttcaaaaagaaaaagtcaccggccaagaaaaaagcagcgaccaaa
gataaaaaagtcgtgaagaagaaaaccgccaaaaagaagaagtaa
DBGET
integrated database retrieval system
