Vibrio ruber: RND59_03225
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Entry
RND59_03225 CDS
T09542
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
vru
Vibrio ruber
Brite
KEGG Orthology (KO) [BR:
vru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vru03019
]
RND59_03225 (hrpB)
Enzymes [BR:
vru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RND59_03225 (hrpB)
Messenger RNA biogenesis [BR:
vru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RND59_03225 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
HA2_N
AAA_22
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WNJ97015
LinkDB
All DBs
Position
1:complement(711973..714411)
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AA seq
812 aa
AA seq
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MAELLAAIANYPQVILKAPPGAGKSTGLPLALLQQGNYSGKIIMLEPRRLAARNIASYLA
SQLGESVGETVGLRVRGTTQVSRHTRLEIVTEGVMTRMLQQDPELNGIDLLIFDEFHERN
LDADISLALALEVQEALRDDLKLLIMSATLDGDALQGILPEAGYIESTGRSYPVELSYKK
PATGGRLVEDAAKEILSLLAREAGSMLVFLPGAGEIQRLVQQLDGQLREDVLVCPLYGQL
TVQQQQQAIAPAPAGKRKVVLATNIAETSLTIEGIRMVVDCGLERLAQWDPKTGISRLES
VRISRASAEQRAGRAGRLEAGICLRLYSEEMLSRQPAAQQPEILRADLTSLAMELAQWGC
RSPADLHWLNCPPESALKQANALLTRLGAMDEQGRLTEMGSAIALLGVAPRYGAILWRGK
QHGAPVAATAAMLVALLEEPLRGNHNPDLHFQLNLVESSALPRSQLYLKRAQQLLAKLDC
SSQPLKVAHEWVAPLLAAGFPDRIALSRGQASRYRLANGQGAMMMPDEPLADEALLVVAD
IVKTRQGDSRIFSAVRAEQAMLQQVLPHLFEWREWLDWDDHKGRLTAENHLCCGQLVLAR
QSLGEPDPARAAEALLNAVVRQGLSVLPWHANAQSLLNRAWCAREWLPELGVPAMDDETL
LAEAELWLLPYMTGMKTLKALEKLDLVAALEARIGWDVKQRLDHALPTHYVVPTGSRYPI
RYQPGQAPVLAVKLQEMFGEQASPLIAHGKIALVLELLSPAQRPLQITRDLAAFWQGAYR
EVQKEMKGRYPKHPWPDDPAHHQPTKKVKKLM
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattattagccgcgattgccaattatcctcaggtgatcctgaaagcaccgccc
ggagcgggaaaatccacagggttaccacttgctttgcttcagcaaggaaactacagcgga
aaaataatcatgctggagccacgcagactcgcagcgcgtaatattgccagttatctggct
tcccaactgggggagtccgtcggagaaacggttggcctgcgtgtccggggcacaacgcaa
gtgagtcgtcatacgcggcttgagatcgtgaccgaaggtgtgatgacccgaatgttgcaa
caagacccggaactgaacggcattgatttactgatttttgatgaatttcatgagcgcaac
ttggatgcggacatctcactggctttggcattagaagttcaggaggcattacgagacgat
cttaaattattgatcatgtcggccacgctggacggggatgccctacaaggcatattgcct
gaggccggttatattgaatccacagggcgcagttatccggttgaattgtcttataagaag
cctgcaacgggagggcggctggttgaagatgccgcgaaagaaatcttgtcattattggct
cgcgaagcaggttctatgctggttttcctgcccggcgccggtgagattcaacgtctcgtg
cagcagcttgacgggcagttgcgcgaggatgtgttggtttgtccgctttatggtcaactg
acggttcaacagcaacagcaggcgattgctccggcaccggctggcaaacgaaaagttgtg
ctggcgactaatattgcagaaaccagtctgacgattgaaggcattcgcatggtggttgat
tgtggtcttgaacgcctcgcccaatgggatccgaaaacgggaatcagccggcttgaatcc
gtgcgtatctcacgggcttccgctgagcagcgcgcaggacgagccggtcgattggaagcc
ggtatctgcctgcgtctttatagcgaggaaatgctgtcccgacagcccgcggcacaacag
cccgagatcttacgggcggatcttacgtcacttgcgatggagcttgcacagtggggatgt
cgctcacctgcggatttacactggttaaactgcccgccggagtccgctctgaagcaagcg
aatgcgttattaacccggcttggcgcgatggatgagcagggacgactgacggaaatggga
agtgcgattgcgctgcttggtgttgcgccacgttatggggcaatactatggcgtggcaaa
caacatggcgcaccggttgctgctacggcagcaatgttagtcgcgttgctcgaagagccg
ctcaggggaaatcataatccggatttgcattttcagctcaatttagtcgaaagctcagcc
ttgccacgcagccagctctatctgaagcgagcacaacagctgttagcaaaacttgattgt
tcttcccagccgcttaaggttgctcacgagtgggttgctccgctactggctgcgggattt
cccgatcgcattgctctgtcgcgtggtcaggcaagtcgctaccggttagccaatggtcag
ggggcaatgatgatgccggatgaacctctggctgatgaagcattattggtggtggctgac
attgtcaaaacccggcagggggatagtcggattttttctgcggttcgtgctgagcaagcg
atgttgcaacaggtactgccgcatttatttgagtggcgggaatggctggattgggatgat
cacaaagggcgattaactgcagaaaatcacctttgctgcggacaactcgttttggcgcgc
caatcgctgggggaaccagaccctgcgagagccgctgaagcgttactcaatgccgtggtt
cgtcaaggtttgtcggttttaccatggcacgcaaacgcccaatcattgctgaaccgtgcc
tggtgtgcgcgagaatggttacccgagttaggggttcccgctatggatgatgaaaccctg
cttgctgaagctgagctatggttattgccctatatgacgggaatgaaaacattgaaagct
ttagagaagcttgatttagtcgcagcacttgaggcgcgcatcgggtgggacgtgaaacag
cgactcgatcatgcattacccacacattatgtggtgccgacgggatcccgttatccaatt
cgttatcaaccaggacaagcgccggttctggcggtgaaattacaggaaatgttcggggaa
caggcttctcctctgattgcacacggtaaaattgcactggtacttgaactgctgtcaccg
gcacaaaggccgttgcaaattacccgtgatctggctgctttctggcagggcgcatatcgt
gaagtgcaaaaagagatgaaggggcgctacccgaagcatccttggccggatgatcctgcc
catcatcaaccgaccaaaaaggtaaaaaaactgatgtag
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