Vibrio ruber: RND59_03385
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Entry
RND59_03385 CDS
T09542
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
vru
Vibrio ruber
Pathway
vru03410
Base excision repair
vru03430
Mismatch repair
vru03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RND59_03385 (recJ)
03430 Mismatch repair
RND59_03385 (recJ)
03440 Homologous recombination
RND59_03385 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vru03400
]
RND59_03385 (recJ)
DNA repair and recombination proteins [BR:
vru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RND59_03385 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RND59_03385 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RND59_03385 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
WNJ96165
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All DBs
Position
1:complement(748089..749828)
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AA seq
579 aa
AA seq
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MIEVKRRPVADISLLPDSIPPILRRLYIGRGVRHINQLEKSAKSLHSYQLLDGIERAVAI
LFDAIQHQQRIVVVGDFDADGATSSALSVLALRMMGSQRVDYLVPNRFDDGYGLSPEVVD
QALAMNAEVIMTVDNGVSSIEGVRYAKQQGLTVIVTDHHLPGNVLPEADAMVNPNLPSCQ
FPSKSLAGVGVAFYIMMALCVAMRRHNWFEHQAIPEPKLMELLDLVALGTVADVVPLDEN
NRVLVHQGLQRIRAGHVRPGIQALIEVAKRDARQLVAADFGFALGPRINAAGRLDDMSFG
VELLLCDNIHAARRMASELDALNQTRKEIESGMKQEAMAFCERLKLGAGSELPVGISLFQ
PDWHQGVIGILASRIKDAYHRPVIAFADAGNGLLKGSCRSIPGLHMRDTLDLIDTHHPGL
ILKFGGHAMAAGLSIRASDFEHFSRQFDQVVRDNLDEAALKGVLLSDGELLPEEFSMYTA
EIIRAGGPWGQSFPEPLFDGEFKVLDQKLVAEKHLKLMLEPIYQGHTTHKMIDAIAFNVD
VRRWPDRSVKTVHIVYKLDINEFRGNQSLQLIVDHIEAR
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgattgaagtaaaaagaagacctgtcgctgatatttccttacttccggacagcattcct
ccgattttgagacgtttgtatatcggtcgtggtgtccggcatatcaatcaactggaaaaa
agcgctaaatccttacacagttatcagttgcttgacggcattgaacgtgcggtggctatc
ttgtttgatgcaatacagcatcaacagcgaatcgtcgttgtcggtgattttgatgctgat
ggcgcaaccagttctgcattgtctgttttggcattgcggatgatgggcagtcagcgggtt
gattatttggtgccgaatcgatttgatgacggttacggtttgagtcctgaagtggtcgat
caggcattggcgatgaatgccgaagtgatcatgacggtggataatggcgtttcttcgatt
gaaggggttcgttatgccaaacagcagggactgactgtgatcgtcactgatcaccacctg
ccgggcaatgtgttacctgaagcggatgcgatggtgaatccgaatttacccagttgccag
tttccttcgaaatcactggcgggggttggcgttgctttttatatcatgatggcactttgt
gttgccatgcgtcgccacaattggttcgagcatcaagccatcccggaacccaaattaatg
gaactgctggacttggttgcgttgggcaccgttgcggatgtggtaccgctggatgagaat
aatcgcgtgttggttcatcagggattgcaacgtatccgtgccggacatgtgcgccccggc
attcaggcattgatcgaagtggcaaaacgggatgcacgccagttggttgctgccgatttc
ggctttgctttagggccgagaatcaatgccgcaggccgattggacgatatgtctttcggt
gttgaactgttgttatgtgacaacatccatgcggcgcgcagaatggccagtgaactggat
gcgctcaaccagactcgcaaagagatcgaatcagggatgaagcaagaagcgatggcattc
tgtgagcggctgaaactaggtgccggaagtgagctgcctgttgggatctctctgtttcaa
ccggactggcatcaaggggtgattgggattctggcctctcggattaaagacgcctatcac
cgtcccgtcattgcttttgccgatgcaggaaacggtttgctcaaagggtcttgtcgctca
attcccggcttgcatatgcgcgatacgctggatttgattgacacccatcatcccggtttg
attctgaagttcggcggccatgcgatggctgcgggactgtcgatcagagccagtgatttt
gaacacttctcccgccagtttgatcaggtcgtgcgcgataatcttgatgaagcggcactt
aaaggtgtgcttttgtctgacggagaactgctgccggaagagttttcgatgtataccgcg
gaaattatcagagcaggagggccttgggggcagtcattcccggagccactgtttgatggt
gaatttaaagtgctggatcaaaagctggtcgcagagaagcatttgaaattaatgcttgag
ccgatttatcagggacataccacccataaaatgatcgatgcgattgcgtttaatgttgat
gtgcgtcgctggccggatcggtcagtaaaaaccgttcatattgtttataagttggatatt
aacgagtttcgcggcaatcagtcgctgcaactgattgtcgatcatattgaagcgcgttaa
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