Vibrio ruber: RND59_03905
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Entry
RND59_03905 CDS
T09542
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
vru
Vibrio ruber
Brite
KEGG Orthology (KO) [BR:
vru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vru03021
]
RND59_03905 (rapA)
Transcription machinery [BR:
vru03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
RND59_03905 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
Helicase_RecD
AAA_34
Motif
Other DBs
NCBI-ProteinID:
WNJ96251
LinkDB
All DBs
Position
1:complement(861077..863983)
Genome browser
AA seq
968 aa
AA seq
DB search
MAFALGQRWISDTESDLGLGTVVALDDRTVTLMFAASEENRVYARHDAPVTRVIFHAGDT
VDCQEGWTLLIEEVSEEGGVLTYIGTRQDTQEPHVELREIFLSHQIRFNKPQDKLFAGQI
DRMDNFALRYRALLNQHQQHKSPMRGLCGGRVGLIAHQLYIAYEVGRRHAPRVLLADEVG
LGKTIEAGMIIHQQVLAGRAERILIVVPETLQYQWLVEMMRRFNLHFSIFDEERCIESQS
EGDNPFETQQYVLCSLDFLRQYPHRFSQAKAANWDLMVVDEAHHLAWEVDQPSLEYQIVE
ALAQQISGVLLLTATPEQLGRESHFARLRLLDPDRFYDFETFIQEEASYEPVAEAVSELA
EDRTLSDESKNHIVELLSEQDVEPLFRIIDGNTSDEDKVSARDELIGNLMDRHGTGRVLF
RNTRASIQGFPQRYVNLIPLTQPQEYIDFIDQYIASLDSDHRLKIESGVFPESAYHAQAH
SSQVWWMFDPRVNWLIEKVKSKRSDKILVIAAKAETALQIEQALREREGIRATVFHEGMS
IIERDKAAAYFAQDEGGAQVLVCSEIGSEGRNFQFASQLVMFDLPMNPDLLEQRIGRLDR
IGQKQDVEIHVPYLQGTSQEVIARWYHEGLNAFAETCPTGNAVFESCAERLMALLASSDE
YPLEDLITDARKMNHDLKAALEHGRDRLLEMHSHGGEKAEQIVCEIAANDGDTELVAFAL
NLFDTIGLNQDDRGEHTLVVTPSEHMMVPSYPGLPYEGATITFERETALSREDIHFMTWE
HPMIQGGIDLLLSEGVGTSAVSLLKNKALPVGTILLELIYVVDAQAPKRSGIGRFLPKTP
IRLMLDAQGNDLSSQVPFEGFNRQLSPVNRHLANKLVTSVQQDVHQLIQTSEVVVQEKVE
SIRQAAQQEMESVLNRELERLQALKAVNSNIRDEEIEILGNQISALSVLIQQAQYQLDSL
RLIVVSHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atggcttttgcgttggggcaacgttggataagtgataccgaaagcgatttaggattagga
actgtggtggcattagatgacagaaccgtcacattaatgtttgctgcatcagaagagaat
cgtgtttatgcacgccacgatgcaccggtcacccgagttatttttcatgccggtgataca
gtcgattgccaagaaggatggacgctcctaattgaagaggtgagcgaagaaggtggggta
ctcacttatatcggtacgcgtcaggatacgcaggaaccgcatgttgagctgcgagaaata
tttttaagtcaccaaatccgctttaataaacctcaagataagctgtttgccggtcaaatt
gatcggatggacaattttgccctgcgttaccgcgcattactcaatcagcatcaacagcat
aaaagtccgatgcgtggcctttgtggcggccgtgtcggtttgattgctcaccaactttac
attgcctatgaagtcgggcggcgtcatgcccctcgcgtactgctggcggatgaagtcggc
ctagggaaaaccattgaagcggggatgatcattcatcaacaagtattggcggggcgggca
gaaagaattctgatcgtggtccctgaaacgctccaatatcagtggctggttgaaatgatg
cgtcgcttcaacctgcatttctctatttttgatgaagaacgctgtatcgagtctcagagt
gagggtgacaatccgtttgagacgcaacagtatgtgctctgttctctcgatttcctgcgt
cagtatcctcatcgtttcagtcaggcgaaagcagctaactgggatttaatggtcgtcgat
gaagcgcaccatctggcgtgggaggttgatcaaccgagccttgaatatcagattgttgag
gcattggcacaacagatttccggtgtgctgttgttgacggcaacaccggaacagctgggc
cgggaaagccattttgcccggttacgtttgttagaccctgatcgcttttatgactttgaa
acatttattcaagaagaagcttcttatgaaccggtggctgaagctgtgtctgaattggct
gaagaccggacgttatctgatgaatcgaaaaaccatattgtcgagctgctttctgagcag
gatgttgaaccgctgttccggattattgacggcaataccagtgatgaagataaggtcagt
gcgagagatgagttaattggtaatttgatggatcgtcatggtaccgggcgagtcctgttt
cggaatacgcgagcatcgattcagggatttccacaacgctatgtcaatctgattccgctg
actcagcctcaggagtatatcgactttattgatcaatatattgcttcgcttgactcagac
caccgcctgaaaatcgaaagcggggtgttcccggagagtgcttatcatgctcaggcgcat
agttcgcaagtgtggtggatgtttgatccgcgtgtgaactggttgatcgagaaagtaaaa
tcgaagcgtagtgataaaattttagtgatcgctgcgaaagcagaaacggcgttgcagatt
gaacaggcactacgtgagcgagaagggattcgggccacggttttccatgaaggtatgtcg
atcattgagcgcgataaagctgcggcttattttgctcaggatgaaggcggagctcaggtt
ctggtgtgtagtgaaattggttctgaaggccgaaatttccagtttgccagccagctggtc
atgtttgatttaccgatgaaccctgatctgttggaacagcgcatcggacgtctggatcgg
attggtcaaaagcaggatgttgagattcatgttccttacttacagggcacgtcacaggaa
gtcattgcccgttggtatcatgaaggcttgaatgcttttgctgaaacctgtccgacaggg
aatgcggtatttgaatcttgcgctgaacgtttgatggcactattggcttcatcagatgag
tacccactggaagatttaatcaccgatgcccgcaagatgaatcacgacttgaaagctgcg
ttggaacacggacgggatcgtttgctggaaatgcactctcatgggggggaaaaagcggaa
cagattgtctgtgaaattgcggcaaatgacggtgataccgagctggttgcttttgcactg
aacctgtttgataccattggattgaatcaggatgaccgtggtgaacatacgctggtggtg
acaccttctgaacatatgatggttccgagttatccgggattaccatatgaaggcgcaacg
attactttcgagcgggaaaccgcactctcccgcgaagatattcattttatgacgtgggaa
cacccgatgattcagggcgggattgatttactcctgagtgagggcgtcgggacatcagcc
gtttctttgttgaaaaataaagctctgccggtcggaacgattttacttgagttaatctac
gtcgtggatgctcaggcacccaaacgcagtggtatcggtcgtttcttgccgaaaacgcca
atccgtctgatgttagatgcgcaaggtaacgacttgtcatctcaggtgccattcgaagga
ttcaaccgtcagctgagcccggtcaatcgccatttagcgaataagctggtgacttccgtt
cagcaagatgttcaccaactgattcagaccagtgaagttgtggtgcaggagaaggtggag
agtatccgacaagccgcgcagcaggagatggaatcagtattaaaccgtgaactcgaacgc
ttacaggcgcttaaagcggtcaattcgaatattcgtgatgaagagattgagattctgggc
aaccagatttcagcgttgtcggtactgattcagcaagcgcagtatcagttggactcatta
cgcctcatcgtggtttcccatcagtaa
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