Vibrio ruber: RND59_06110
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Entry
RND59_06110 CDS
T09542
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
vru
Vibrio ruber
Brite
KEGG Orthology (KO) [BR:
vru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vru03032
]
RND59_06110 (gyrB)
03400 DNA repair and recombination proteins [BR:
vru03400
]
RND59_06110 (gyrB)
Enzymes [BR:
vru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
RND59_06110 (gyrB)
DNA replication proteins [BR:
vru03032
]
Prokaryotic type
DNA Topoisomerases
RND59_06110 (gyrB)
DNA repair and recombination proteins [BR:
vru03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RND59_06110 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
GyrB_hook
HATPase_c
HATPase_c_3
UFD1_N2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
WNJ96654
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Position
1:complement(1301980..1304394)
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AA seq
804 aa
AA seq
DB search
MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIV
VTIHEDNSVSVSDDGRGIPTELHTEENVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGI
SVVNALSEKVVLTIHRSGHIHTQTYHHGVPQAPLAVVGDTEKSGTMVRFWPSSETFTNIE
FHYEILAKRLRELSFLNSGVSIKLNDERDSKHDHFMYEGGIRAFVSHLNRNKTPIHDRVF
HFNQEREDGITVEVAMQWNDSFQESIFCFTNNIPQRDGGTHMAGFRAALTRTLNSFMDKE
GFSKKEKTATSGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVETAMGEKLSEF
LIENPNEAKIVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPALSEL
YIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR
DEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYKVKKG
KQEQYIKDEDSMTQYQISLALDGASFHVNPDAPALSGGALEGLVQRYNSAMKLIERMSRR
YPYALVGEFIYMTRLTETDCADHDKVEAWTKQLIEQLNAKEVGASQYSYKIEQNQETGLS
SPKVTVRTHGVTYEYMLSVDLLNSKEYGSLAGLSEELNGLIEEGAYIQRGERTQLVNSFA
EAIQWLMKESRRGLAVQRYKGLGEMNPEQLWETTMDPETRRMMQVTIDDAVGADELFTTL
MGDQVEPRRAFIEDNALKVANLDV
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaataattacgattcatcgagtattaaagtactgaaaggtctggacgcagtcaga
aaacgtccggggatgtacatcggcgacacggatgatggtacgggtctgcaccacatggtc
tttgaggtggtggataactcaattgatgaagcgttagcgggttactgtaaagatatcgtc
gtgacgattcacgaagataactctgtttctgttagtgatgatggtcgggggattccgacg
gagcttcacacggaagaaaatgtttctgcagcagaagttatcatgacggtactacatgcg
ggcgggaaatttgacgataactcgtataaggtttccggcggtttgcacggcgttggtatc
tcggtcgtgaatgctctgtctgaaaaggttgtcctgacgattcatcgtagtggtcacatc
catactcagacttatcatcatggcgttccgcaggcaccactggcggttgttggtgacacc
gagaaatcgggaaccatggttcggttctggccaagtagtgaaacatttaccaatatcgag
ttccactatgagattcttgccaaacgtctgcgtgagctgtctttccttaactccggggtg
tcgattaagttgaacgacgagcgtgacagtaagcacgatcacttcatgtacgaagggggg
attcgggcattcgtttcacacctgaaccgcaacaaaaccccaatccatgacagagttttc
cactttaaccaagagcgtgaagatggcatcacagttgaagttgccatgcagtggaatgac
agttttcaggaaagtattttctgctttaccaataatattcctcagcgagacggcgggacg
catatggccggtttccgggcggcattaacccgtacgctgaactcgtttatggataaagaa
ggcttcagtaagaaagagaaaaccgcaacatccggtgatgatgcccgtgaaggtctgact
gcggttatctcggtgaaagtaccggatccgaagttctccagccagacgaaagataaactg
gtttcttcagaagtgaaatctgcggttgaaaccgcaatgggtgaaaaattatcagagttt
ctgattgaaaacccgaatgaagccaaaatcgtttgttcgaaaattatcgatgcggctcgt
gcccgtgaagcggctcgcaaagcgcgcgagatgacccgccgtaaaggtgcgttggatctc
gcaggtctgccgggtaagctggcggactgtcaggaaaaagacccggctctttctgaactc
tatattgtggagggtgactcggctggtggctctgctaaacaaggccgtaaccggaagaat
caggcaattttgccgctgaagggtaagatcctcaacgttgaaaaagcccgttttgacaaa
atgctatcgtctcaggaagttgcgacacttatcactgcattaggctgtggtattggccgt
gacgaatataatccggacaagctgcggtatcacaatatcatcatcatgaccgatgccgat
gttgatggttcgcacatccgtactttgctgttgacctttttctatcgccaaatgcccgaa
ttgattgagcgcggctatgtttatattgctcagccaccgttatataaagtcaaaaaaggc
aaacaagagcaatatattaaagatgaagactcaatgacgcagtatcagatttcactggcg
ttggatggtgcatcattccacgtcaaccctgatgcccccgcattgtctggtggtgcgttg
gaagggttggttcagcgttataattctgcaatgaagctcattgaacggatgagtcgccgc
tatccatatgctttggttggcgagtttatctatatgactcgattaaccgaaaccgattgt
gctgatcacgataaagttgaagcctggactaagcagttaattgagcagctcaatgccaaa
gaagtgggtgcaagtcagtacagttataagattgaacaaaatcaagagactggtctttct
tctccgaaagtaaccgttcgtactcatggtgtgacatacgaatatatgctgagtgtcgat
ctgctgaattcgaaagagtacggttcattggctggcttatcggaagaactgaacgggctg
attgaagaaggtgcttatattcagcgaggcgagcggactcaattggtgaatagctttgcc
gaagcgattcagtggttgatgaaagagtctcgtcgtggtttggcggtacaacgatacaaa
ggtctgggagagatgaaccctgagcagttgtgggaaactaccatggatccggaaacgcgt
cgtatgatgcaggtgaccattgatgatgcggtgggtgccgatgagctgtttacgaccctg
atgggcgatcaagttgaaccgcggcgtgccttcattgaagacaacgcgctgaaagtggca
aatctggacgtttag
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