Vibrio ruber: RND59_06285
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Entry
RND59_06285 CDS
T09542
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
vru
Vibrio ruber
Pathway
vru00071
Fatty acid degradation
vru00280
Valine, leucine and isoleucine degradation
vru00310
Lysine degradation
vru00362
Benzoate degradation
vru00380
Tryptophan metabolism
vru00410
beta-Alanine metabolism
vru00640
Propanoate metabolism
vru00650
Butanoate metabolism
vru00907
Pinene, camphor and geraniol degradation
vru00930
Caprolactam degradation
vru01100
Metabolic pathways
vru01110
Biosynthesis of secondary metabolites
vru01120
Microbial metabolism in diverse environments
vru01200
Carbon metabolism
vru01212
Fatty acid metabolism
Module
vru_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
vru00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
RND59_06285 (fadB)
00650 Butanoate metabolism
RND59_06285 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
RND59_06285 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
RND59_06285 (fadB)
00310 Lysine degradation
RND59_06285 (fadB)
00380 Tryptophan metabolism
RND59_06285 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
RND59_06285 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
RND59_06285 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
RND59_06285 (fadB)
00930 Caprolactam degradation
RND59_06285 (fadB)
Enzymes [BR:
vru01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
RND59_06285 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
RND59_06285 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
RND59_06285 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
RND59_06285 (fadB)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
Peptidase_S49
NAD_binding_2
CUB_M02D8_5_5th
Motif
Other DBs
NCBI-ProteinID:
WNJ96689
LinkDB
All DBs
Position
1:complement(1335063..1337246)
Genome browser
AA seq
727 aa
AA seq
DB search
MIFQSKTLQVKEIEGGILELQFCTPQSVNTLDTATLGYLDKALDAIQDFPGLKGLVLTSD
KDSFIVGADINEFLGLFQYPRDELEKWLQYANQIFCKLEDLPVPTVSALCGYTLGGGCEC
VLATDFRVAARSTKIGLPETRLGIMPGFGGCVRLPRLIGADNALEAIVQAKIFSAEHALS
VGLVDAITTEEALAATARRTLDDAIHNKIDWKKVRQEKCAPLTLSPVERLMVFSTAKGMT
HQKVSTHYMAPFLAIETIESSATLPRDEALNIERKNFVTLAKSDQAAALVSIYLNDQYIK
GLAKKSKQSLTHPVSHSAVIGAGVMGGGIAYQSAIKGIPAVLKDIVPDSLKLGMDHSAQL
LEQGVKRGKLSPRDMANTLASIRPTLNYAGIEDVDVIVEAVVENPKIKSSVLKELEEKVT
ANTILTSNTSTIPITQLAAGLSRPDKFCGMHFFNPVHKMPLVEIIRGKETSDETIDTVVA
FAAHMGKSPIVVNDCPGFFVNRVLFPYFLAFCQLLDEGYDFVQIDKIMEKDFGWPMGPAY
LLDVVGIDIAYHAQQVICQAYPTRMKSSPDNIITRLYEAKKFGQKTGEGFYHYYTDKRGK
SQKVLSPDIYQLVYASGEPLPVTDKQMIMDRMMIPMMNEVILCMEENIVSSPAEADIALV
YGLGFPPFRGGVCRYLDTIGITQYIQTAQSYQRLGELYHVPKSLEVMAHQARVFYPIHHD
KLESERG
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgatctttcaatcaaagacattgcaggtaaaggaaatagaaggtggtatccttgagctg
cagttttgcacacctcagtcggtcaatacacttgatacggcaacgctgggctatctggat
aaagcattggatgcaatccaagactttccgggactcaaaggcttagtgctgacatccgat
aaagacagtttcattgtcggggccgacatcaatgagtttttaggcttattccaatatccg
agagatgagctggaaaaatggcttcagtatgccaatcaaatcttctgtaaacttgaagat
ctgccagtgccaacagtctcagccctgtgtggatatacccttggtggcggatgtgagtgt
gtactcgctaccgattttcgggtcgcggcacgctcaaccaaaattggcttacccgagaca
agactgggaatcatgcccggattcggtggttgtgtccgtctgccaagattaatcggtgcg
gataacgccttagaggcgatcgttcaggccaaaatattcagtgccgagcacgcactctct
gtcgggctggtcgatgccatcacaacagaagaagcgcttgccgcaacagcaagacgaaca
ctggatgatgcgattcacaacaagattgattggaagaaagtacgtcaggaaaaatgtgcg
ccgcttactttatcccccgtagaacgtctgatggtcttttcgacagccaagggaatgacc
catcaaaaagtaagcactcactatatggcaccattcctagcgattgagacaatagaatct
tcagcaacgctgcccagagatgaagcactaaacatcgagcggaagaactttgttactctg
gcaaaatccgatcaagcggccgcattggtcagtatttatctcaatgaccaatatattaaa
ggcctcgccaaaaaatcgaaacagtcactgacccaccctgtcagtcacagtgccgtgatt
ggcgcaggcgtgatgggtggcgggattgcttaccaatccgcgattaaagggatccctgcc
gttttaaaagatatcgtccctgactctctgaaactgggcatggatcatagtgctcaactg
ttagagcagggggtcaaaagaggtaagctctctccgcgggacatggctaacacccttgct
tcaatacggccaacacttaactatgccggtatagaagatgtggatgttattgttgaagcc
gtggttgaaaaccctaaaatcaaatcgtctgtcctgaaagagcttgaagaaaaggttacc
gccaatacaattctgacctcaaatacctcaacgattccgattacccaattagcagcggga
ctctcaaggcctgacaagttctgtggcatgcatttctttaatccggtgcataaaatgccg
ctggttgaaattattcgtggcaaagaaaccagtgacgaaaccattgatacagtcgtggct
tttgctgcccatatgggtaaatccccgattgtcgttaacgattgtcccggattttttgtc
aaccgcgttctctttccttattttctggccttttgtcagttgctcgatgaagggtacgac
tttgtccaaattgataaaatcatggagaaagactttggctggccgatggggcctgcctat
ttactcgatgttgtcggtatcgacatcgcgtatcacgcacaacaggtgatctgccaagct
tatccaacccgaatgaaatcatccccggacaacatcattacccggctttatgaggcgaaa
aaatttggtcagaaaaccggtgaaggcttctatcactactatacggataaacgtggtaag
agccagaaagtgttatcacctgacatctaccagcttgtctacgcatcgggagaaccgttg
cctgtcacagacaaacaaatgatcatggatcgcatgatgattccgatgatgaatgaagtc
attctctgcatggaggaaaatattgtctcctctcccgccgaagcagacatagcactggta
tacggacttggctttccaccattcagaggtggtgtttgccgctatctggataccatcggt
attacacaatatatccaaactgctcagtcataccagcgccttggagaactctatcacgtg
ccgaaatctctcgaagtaatggctcatcaagcaagagttttctatcccatccaccatgac
aaattagaatcagagagagggtaa
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