Vibrio ruber: RND59_09950
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Entry
RND59_09950 CDS
T09542
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vru
Vibrio ruber
Pathway
vru03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RND59_09950 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vru03400
]
RND59_09950 (recB)
Enzymes [BR:
vru01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
RND59_09950 (recB)
DNA repair and recombination proteins [BR:
vru03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RND59_09950 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
SLFN-g3_helicase
AAA_11
AAA_12
AAA_25
Motif
Other DBs
NCBI-ProteinID:
WNJ94478
LinkDB
All DBs
Position
1:2196865..2200488
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AA seq
1207 aa
AA seq
DB search
MSHTTSDAMIPLEPMRFPLHGMRLIEASAGTGKTFTIAGLYLRLLLGHGDAQNRHATPLR
VDQILVVTFTEAATAELKGRIRTRIHEARLAFARHHSDDPLLQSFLDEIPDHDEAAGILL
QAEREMDTMAVYTIHGFCQRMLVQNAFESGSRFHHEFITDESRLKAQVVADYWRRQFYPL
SVELAAEVRNLWPTPNDLLAQIGSYLSGHPLSLSVSAMDASLEQLHRDNLQRIVEMKAQW
RQYQSEIDACIAESDVNKRVYTKKFRPQWIEQVSQWAEAETDSYRVPEQLSRFSQQVLYE
KTPTGTPPEHPLFEIIDNFLATPVSIEAPLKAHAIETCRHLLAKAKSEQQWLSFDDLLSQ
LSSALDLDTSGLLAQRIRMLYPVAMIDEFQDTDPLQYHIFSHIYASHPDCGLLMIGDPKQ
AIYAFRGADIFTYIKARRQVRSHFTLATNWRSGQSMIDAVNRLFASSDSPFLHDSDIPFI
QVAAPPEAQQRQWQLYQQTQPAMTYWWPEDVEPDAVMTKGEYEQVMANATAAQIQTILQA
AQDGEGHLYTKNGQKNIEPGHIAVLVRTGREGRRIKEALARQDIASVYLSNRESVFASDI
AVDIQRLLQAVLTPEQERPLRAALASPLFGLDIQDLDALNRNESLWERVVQEFRQYRSLW
SERGILPMLRAVLYQRHLAERWLALKGGERLLTDYLHIGELLQQAGAEIESDHGLLRWLT
QSMIDVAQGSHPETSIQRLESEKNLVQIVTIHKSKGLEYDLVFLPFVMSFREAKEARYYD
ETQDRIVLDMTRKEEALAKAEKERLAEDLRLLYVALTRSVYGCYVGIAPLKGRGKTSSAH
LSAIGYLLQQGEPGDAALLKQGIVSQCDEGGHTVIGIPPQLPESPLPRVGVAQQTLTAQQ
KQHPIERAWRMTSYSNLVKQSGHGTFLDATQEVPGFDLDSAGEVDEALFDPAEQTIFTFP
KGATAGTFLHSLLEQIEFTETPDSPTNTAVIQTLLDSATIDQSWLPVLQKMLTHVLQAPL
DGKALRLGDIPAPQRLVEMEFLLPIDRLRAPLLNRILKRYDVLSAHAGELDFAQVEGMLK
GFIDLVFEYQGRYYVLDWKSNHLGNQPADYAASHLDAAMVEHRYDVQYQIYTLALHRFLA
SRLADYTYEQHFGGVYYLFLRGMDGQTSSGVFAHRPKFALIDALDRFFAGEDDNMRATQA
GQMELDL
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgagtcacacaacatccgatgcgatgattccactggagccgatgcgatttccgttgcat
gggatgcgtttgattgaggcatccgcagggacgggaaaaacatttacaattgccgggctc
tacttgcgtctgttgttggggcatggtgacgcacagaaccgacacgctaccccgttgcgg
gtagatcaaattttagtggtgacatttactgaagcggcgaccgcagagttgaaagggcgg
atccgcacccggattcatgaagcccggctggcatttgcccgacatcatagtgatgacccg
ttgctgcaatcatttctcgatgaaatccctgaccatgatgaggctgccggcattctgctt
caggcagagcgggagatggatacgatggcggtttataccattcacggcttctgtcagcgg
atgttagtgcagaatgcgtttgaatccggcagccgtttccatcacgagttcattaccgat
gaaagtcgtctcaaagctcaggtggtggcggattactggcgacgacagttttatccgctg
tcggttgagctggccgcagaagtccgcaacttatggccgacaccgaatgatttgcttgcg
caaatcggctcttatctgagtggtcatccgctgtctctttccgtcagtgcaatggatgcc
agccttgaacaactgcaccgtgataatttacagcgtatcgtcgagatgaaggcgcagtgg
cgacagtatcagtctgagattgatgcatgtattgccgaatcggatgtgaataagcgggtt
tataccaaaaaattccggccacagtggattgagcaggtatcccaatgggctgaagcagag
accgacagttaccgggttcccgaacagttatcccgattttcgcaacaagtattgtatgag
aaaacaccgaccggaacgccaccggagcatccgttatttgagatcatcgataactttctt
gcgaccccggtatcgattgaagcgccgttgaaagcccatgccattgaaacttgccgtcat
ttgctggcgaaagcgaagtctgaacagcagtggttatcgtttgatgatttattatctcag
ctttcatcggctttagatcttgatacctcaggcctgttagcgcagcggattcgcatgtta
tacccggtcgcaatgattgatgaatttcaggataccgatccgttgcaataccatattttc
agccacatttatgcatcgcatccggactgtggcttgttgatgattggtgatccgaaacaa
gccatttatgcgttccgcggagcggatattttcacctatattaaagcgcgtcgtcaggta
cgttcccattttacactggcgaccaactggcgctccggacagtcgatgatcgatgcggtg
aatcgattgtttgcatcgtctgacagtccttttctccacgattccgatattccgtttatt
caggttgcagcaccaccggaggcgcagcaacgccaatggcaactatatcagcagacacaa
cccgccatgacttactggtggccggaggatgttgaaccggatgccgtcatgaccaaaggt
gaatacgaacaagtcatggccaatgcgaccgctgcgcaaatccaaacgattctacaggct
gcgcaggatggggaaggccacctttataccaagaatggacagaaaaacattgagcccgga
catatcgccgtattagttcgcacgggacgtgaaggacgacgtatcaaagaagcgttggct
cgtcaggatattgccagtgtctatttgtctaaccgggagagtgtttttgccagtgacatt
gcggtagatattcagcgattgttacaggccgtgttgacaccggagcaggagcgtccgtta
cgggctgcgctggcatctcccttattcggactggatattcaggatttggatgcattaaat
cgcaatgaatcgttatgggagcgagtggtgcaggagtttcgtcagtatcggagtctctgg
tcggaacgcggcattttgccaatgttgcgggcagtgctttatcagcgtcatcttgctgag
cgctggcttgcgctgaaagggggagagcgactattgacggactatttgcacatcggtgag
ctgttacagcaagcgggtgctgaaatcgaaagcgaccatggtctgttgcgctggctgact
caatcgatgattgatgtggcgcaggggagtcatccggaaacgtcgatccagcggttggag
tcagagaaaaatctggtgcaaattgtcacgattcataagtcgaaagggcttgagtatgat
ctggtgtttcttccgtttgttatgagttttcgtgaggccaaagaagcgcgttactacgat
gaaacacaggatcgcattgtactggatatgacccgtaaagaagaggcgctcgccaaagcg
gagaaagaacggctggctgaagatttacgcttgttgtatgtggctttaacccgttctgtg
tatggttgttatgtcgggattgcgccattgaaagggcgaggcaagacaagcagcgctcat
ttatcagcaatcggttatttgttgcaacagggtgaacccggtgatgctgcactgttgaag
caggggattgtctcgcaatgtgatgaagggggacacacagttatcggcataccaccacaa
cttcctgagtcacctttgccacgggttggcgtagcacaacaaaccttgacggcacagcag
aaacaacatccgattgagcgggcctggcgtatgaccagttattccaatctggtcaagcag
tccggacatgggacttttctcgatgccacgcaggaagtgccgggattcgatctcgattcg
gccggagaagtggatgaagcgctgttcgacccggcagaacagacgattttcacctttccc
aaaggggcaaccgccggaacattcctgcacagtttgttagagcagattgaatttaccgag
acgccggacagtccgacgaatacggcggtgatacaaaccttgcttgattcggccacaatt
gatcaatcttggctgccggtattacagaaaatgctcacgcatgtattacaggcaccattg
gatgggaaagcattacggttaggagatattccggcaccgcagcgtctggtcgaaatggag
tttctgttaccgatagatcgattacgtgcgccgttgttgaaccggattctgaaacgatac
gatgttttgtccgctcacgcaggagagctggattttgcacaagtcgaagggatgctgaaa
gggtttatcgatctggtctttgaatatcaggggcggtattacgtgctggactggaaatca
aatcatttggggaatcagcctgccgactatgccgcgtctcaccttgacgcagccatggtt
gaacatcggtatgatgttcagtatcaaatttatacactggcactgcaccgttttctggcg
agtcgtctggcggattatacctatgagcaacacttcggcggggtgtattatctgtttttg
cgaggtatggacggccagacatcgtcgggggtgtttgcccaccggccaaagtttgcactg
attgatgcattagaccgtttttttgccggagaagatgacaatatgcgtgcaacacaggca
ggacagatggagcttgatctatga
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