Vibrio ruber: RND59_09955
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Entry
RND59_09955 CDS
T09542
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
vru
Vibrio ruber
Pathway
vru03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RND59_09955 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vru03400
]
RND59_09955 (recD)
Enzymes [BR:
vru01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
RND59_09955 (recD)
DNA repair and recombination proteins [BR:
vru03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RND59_09955 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Helicase_RecD
SH3_13
AAA_11
Viral_helicase1
AAA_22
UvrD-helicase
SLFN-g3_helicase
nSTAND3
AAA_16
CbiA
DEAD
AAA_28
PhoH
T2SSE
MukB
DO-GTPase1
UvrD_C
TrwB_AAD_bind
NTPase_1
DUF87
SRP54
ResIII
NPHP3_N
AAA_5
AAA_7
Motif
Other DBs
NCBI-ProteinID:
WNJ94479
LinkDB
All DBs
Position
1:2200485..2202584
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AA seq
699 aa
AA seq
DB search
MTQLAQALELLAEKRVIRPLDQQFARFIAHQCSQDQAEVAWLAALVSYELGRGHICVPLI
DDEERVALAPLLFGHTVAELHVVRDCVALIDWFAVIKRCPLIGEPGSYLPLIFDGKRLYL
QRYWFYEHQLASRLQMLSSSVSIDAAQTEYLAETLNQLFPRPYDALFQALQQVASVGERQ
RLVCEYLDIVRESALDWTSIDDLLQQASNGSALSASDISVLDTLVPESVCLNWQKVAAAI
ALSRRFAVISGGPGTGKTTTVARLLAALVSQNRSLQKKLVIKLVAPTGKAAARLTESIGQ
AVERLNISTEVKALIPTQASTLHRLLGAIPNSAEFRHHQRNPLHVDLLVVDEASMIDLPM
MYKLVTALPDHARLVLLGDKDQLASVEAGAVLGDICAFQPLGYSRSQMAQLARLTGYQFE
SHIPHQDVPALADSLCLLQKSYRFHARSGIGQLAKAVNAGDVSQLLQVIQQSYTDVQIHG
LDSESYHQMLQTLVAEYAHYLHAITDPSAVDAGTPPEKKAAYVLRLFHRCRLLCAIRDGD
FGVTGVNQRIERALSRHQLIRNSDEPWYEGRPVMITRNDHHLELYNGDIGICMRDPQDER
LKVYFEQFDGHVRGFLPSRIPQHETAYAMTIHKSQGSEFDFTLLLLPPEHTPLLTRELVY
TGITRARKQLALFTSPKILQAAVRIKTQRVSGLREKMAQ
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgacacaattggctcaggcgctggaattgttagctgagaaacgcgtgattcgtccgctg
gatcaacaatttgcccggtttattgctcaccagtgttcacaggatcaggctgaggtggct
tggttagctgcattagtcagttatgaactggggcggggacacatttgtgtaccgctgatc
gatgacgaagaacgagtggcgcttgcgccgttattattcggccatactgtggctgagttg
cacgtggtcagagactgtgttgcattgatcgattggttcgcggtgattaaacgctgtccg
ttgatcggtgagccgggtagctatctgccactgatttttgacggaaagcgactttatctc
cagcgttactggttttatgaacatcagctggcgtcgcgtttgcagatgctgtcatcatct
gtttcgatcgatgcggcacagaccgagtatttagctgaaacgttgaatcaattatttccc
cgtccctatgacgctttatttcaggcactacagcaggtggcatcggtgggagagcgccag
cgtctggtgtgtgaatatctggatattgtccgtgaatcagcgttggactggacatcgatt
gacgacttgctacagcaagcatcaaatggttcagcactctcagcatcggatatctcagtg
ttagatactttggtgccggaatcggtatgtctcaactggcagaaagtggcagcagccatt
gcgttgagccggcgctttgcggtgatttccggcgggccgggcaccgggaagacaaccacg
gtggcacggctgttggcggcactggtgagtcaaaatcgttcgttgcagaaaaaattggtg
atcaaattggttgctccgaccggaaaggccgcggcacggttgactgagtctatcgggcag
gcggtggagcgcttgaatatttctaccgaggtgaaagcgctgataccgacgcaggcgagt
acattgcaccggttactcggggcaattccgaacagtgcggagtttcgtcaccatcagcgc
aatccgctccatgtcgatctgctggtggttgatgaagcatcgatgattgatttgccgatg
atgtataaattagtcacggcattacccgatcatgcccgtttggtacttctgggtgataag
gatcagttagcgtctgtcgaggccggagcggtattaggcgatatctgtgctttccagccg
ttggggtatagccggagtcaaatggctcagttagcccgattaacgggatatcaatttgaa
tcacacatccctcatcaagatgtaccggcactggcggacagtttatgtctgttgcagaaa
agttaccgttttcatgcgcgttccgggatcggtcaactggctaaagccgtcaatgcaggg
gatgtttctcagctgcttcaggtgattcaacaaagctacaccgatgtgcaaattcatggg
ctggacagcgaaagttatcatcagatgttacagacactggtggcggagtacgctcattat
ttgcacgcgattacggatccatccgcagttgatgcgggcacgcctcctgagaaaaaagcg
gcatatgtgttgcgtttatttcaccgctgccgattattgtgtgcgattcgggacggtgac
tttggtgttaccggtgtcaatcagagaattgagcgggctttaagtcgtcatcaactcatt
cgtaacagtgatgagccgtggtacgaaggtcgtccggtgatgatcacccggaatgatcac
catcttgagttatacaatggggacatcggcatttgtatgcgcgatccgcaagacgaacgg
ctgaaggtctattttgagcaatttgacggccatgtgcgcggttttttgccgagtcggatt
cctcagcatgaaacggcttatgccatgacgattcacaagtcacagggaagcgaatttgat
tttacattgctactgttaccaccggagcatacgccacttttgacgcgtgaattagtttat
accgggattactcgggcgcgaaaacaattggcactgtttacttcccccaaaattttgcag
gctgcggtgaggataaaaacacagcgggtgagtggcttaagagaaaaaatggctcagtga
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