Vibrio ruber: RND59_10265
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Entry
RND59_10265 CDS
T09542
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vru
Vibrio ruber
Pathway
vru03030
DNA replication
vru03430
Mismatch repair
vru03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RND59_10265 (dnaE)
03430 Mismatch repair
RND59_10265 (dnaE)
03440 Homologous recombination
RND59_10265 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vru03032
]
RND59_10265 (dnaE)
03400 DNA repair and recombination proteins [BR:
vru03400
]
RND59_10265 (dnaE)
Enzymes [BR:
vru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RND59_10265 (dnaE)
DNA replication proteins [BR:
vru03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RND59_10265 (dnaE)
DNA repair and recombination proteins [BR:
vru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RND59_10265 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
WNJ94535
LinkDB
All DBs
Position
1:2264674..2268153
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFIHLRVHSDFSMIDGLSKVPPLVKKVAEMGMPAMALTDFTNLCGLVKFYSTAHNC
GVKPIIGADFSVRSQAFGDDLTRLTLLAADNTGYKNLTWLISQAYLRGHIQHQPVIDQEW
LAEHSEGLIVLSGGKNGDIGQALLKGNQKLVEQYVDFYQTHFPDRFYLELIRTGRLDEET
YLHFAIELAEQYDLPVVATNEVVFLSRDLFDAHEIRVAIHDGYTLDDPRRPKHYSEQQYL
RSEDEMCELFKDIPEALQNTVEIAKRCNVTVRLGEYFLPNFPTEGMNIDDFLVKKSQEGL
EERLEFLFPDPQVRQEKRPAYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDRVIEHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFKAEPA
LQELYDADEEVRELIDKCRILEGCTRNAGKHAGGVVISPTTITDFSPIYCDPEGHYPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKRGEPPVRIEAIPLADPQSFRNL
QNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREP
ISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRAIFEQGAVNNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTEKVVGLVDECIRMNLTVLPPDINSGLYRFNVDDQGAIVYGIGAIKG
VGEGPIDAILEARNAGGHFKDLFDFCARVDLKRVNKRVIEKLIYAGALDRLGPHRAAMMA
SLDDAVKAASQHRQAESFGQTDMFGVLTDAPEAVEQRYTQVPPWPEKVWLEGERDTLGLY
LTGHPVNAYLKELNYYTDCRLKDVTPTRRDQSLKVAGLVIAARVMTTKRGSRIGILTLDD
RSSRLEAMLFSDALEQYAELLEKDKILVLNGQVSFDDFSGGLKMTVREVMDLDSAREKYA
KSLSLSITQTQIDEPFFERFSRILEPHRSGSVPIHIYYQRADARAKLTLGTEWRVTPNDT
LLDELKQLLGPGQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaccctaaatttatccatctcagagttcatagtgatttttctatgattgatggg
ctatctaaagtgccgcctttagtcaagaaggttgcagagatgggaatgccggcgatggcg
ttaactgattttaccaacctgtgcgggctggtaaaattttatagtaccgcccataactgt
ggtgtaaagccgatcatcggcgctgatttttcagttcgttcgcaggcattcggtgatgat
ctgactcgcctgacattacttgcagctgataataccggctataaaaatctgacttggctt
atctcacaagcctatctccgcggacatatccagcatcagcccgtaattgaccaagaatgg
ttggctgaacactcggaaggtttaatcgtcttgtccggtggtaaaaacggagatattggt
caggcgttactgaaaggcaaccagaaactggttgagcagtatgttgacttttatcagacc
catttccctgatcgtttttatcttgagttaatccgaaccggccgccttgatgaagaaacc
tatctgcactttgccatcgaattggcggagcaatatgatttaccggtggtggccacaaat
gaagtggtctttttaagccgggatctgtttgacgcacatgaaatccgagtggcaattcat
gacggttacacactggatgacccgcgcagacccaaacactatagtgaacagcaatatctt
cggagcgaagatgagatgtgtgagctgttcaaagatattcccgaagcgctgcaaaataca
gtcgaaatcgccaaacgctgtaatgttactgtgcggctcggtgagtatttcttaccgaat
ttccctacggaagggatgaatatcgatgactttttagtcaaaaaatcgcaagaagggcta
gaagaacgactcgaatttctctttcccgatccgcaagtcaggcaggaaaaacggccggca
tatgatgagcgtttgcagattgaactcgacgtcatcaaccagatgggatttcccggttac
ttcctgatcgtgatggagtttattcagtggtccaaagataatgatattcccgtggggcca
gggcgaggctcaggtgccggatcgctggtggcctacgcgctgaaaattaccgatttggat
ccgttggagtatgacctgcttttcgaacgttttctcaatccggagcgggtgtcaatgccc
gactttgatgtcgatttctgtatggataaacgagatcgggtgatcgaacacgttgccgag
atgtacggaagagatgcggtttctcagatcattaccttcggtacgatggcagcgaaagcg
gttattcgtgatgtgggaagggttttggggcacccattcgggtttgtggatcgtatttct
aagctggtaccgcctgatccgggcatgacgctggagaaagcgtttaaagctgagcctgca
ctccaagaactctatgatgccgatgaggaagtcagagagctgatcgataagtgtcggatt
ctggaaggctgtacccgaaatgcaggtaaacatgccggtggggttgtgatctcaccgacg
acgattaccgatttttcccccatctattgtgatccggaaggtcactatccggttactcaa
ttcgataaaaatgatgtcgagaccgcaggactggttaagtttgactttttgggattacgg
acactgacgattatcgactgggcacttggtctgattaatccgcgcctcgaaaaacgagga
gaaccaccggttcgtatcgaagcgattccgctggccgacccacagtcatttcgtaatttg
caaaattcagaaacaaccgcagtgtttcagctcgaatcgcgcggaatgaaggatctgatt
aaacgacttcagccggactgtttcgaagatattatcgcattggtggcgttgttccgtccc
ggacctttgcagtcagggatggtggataactttattgaccggaagcatgggcgtgagccg
atttcctatcctgatgaaaaatggcaacatgaatcgcttaaagagattcttgagccgaca
tatgggatcatcctttatcaggaacaggtcatgcagattgctcaggtcctggccggttat
accttgggtggtgcagatatgctgcgccgcgcgatggggaagaaaaagccggaggaaatg
gcaaagcagcgggcgatatttgaacagggcgcagtcaataacggtattgatggcgaactt
gcgataaaaatcttcgacttggtggagaaattcgccggttatggctttaacaagtcgcat
tcggcagcatatgcactagtatcatatcagacactgtggttgaaaacgcattatccggcg
gagtttatggccgcagtcatgactgcggatatggacaataccgagaaagtggtcggtttg
gtcgatgaatgtatccggatgaacctgacagtactgccgcctgatattaattcagggctt
tatcggtttaatgtcgatgatcagggcgctatcgtatacggtatcggcgcgattaaaggt
gttggcgaagggccgattgatgcgattctcgaagcacgtaatgctggcggacattttaaa
gacttatttgatttttgtgcgcgagttgatctaaaacgggtcaataaacgtgttatcgag
aaactgatttatgccggtgcgcttgaccgtcttgggccacaccgtgcggctatgatggct
tctctcgatgatgcggttaaagctgccagccaacatcgtcaggccgaatcatttggtcag
acggatatgtttggggtgctgaccgatgcaccagaagccgtggaacaacgctatacgcaa
gtgcccccatggccggaaaaggtttggcttgaaggcgaaagagatacactgggactttat
ttaaccggtcacccggttaatgcgtatctgaaggaactcaattactatacggattgtcga
ttaaaggatgtgacgccaactcgacgtgatcaatcgttaaaagttgcgggattggtaatt
gccgcacgggtgatgaccaccaagcgcggctcgcgtatcgggatattgacattggacgac
cgttccagtcggttagaggcgatgttgttctccgatgcgctggaacagtatgcagaattg
cttgaaaaagataaaattctggtgctaaacggacaggtcagctttgatgacttcagtggt
ggccttaaaatgactgtccgcgaagtgatggatttagattcagcacgagaaaaatatgca
aagagtttgtctttatcaatcactcaaacacagattgatgaaccattttttgagcgtttc
agccgtattctggaacctcaccgctccggtagtgtgccgatacatatttattatcaacgg
gctgatgccagagcgaaattgaccttgggtacagaatggcgtgtgacgccgaacgataca
ctgttggatgaattgaaacaattgcttggccccggccaagttgaactcgaatttaactaa
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