Vibrio ruber: RND59_11160
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Entry
RND59_11160 CDS
T09542
Name
(GenBank) RNA polymerase sigma factor FliA
KO
K02405
RNA polymerase sigma factor FliA
Organism
vru
Vibrio ruber
Pathway
vru02020
Two-component system
vru02040
Flagellar assembly
vru05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vru00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RND59_11160
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
RND59_11160
09142 Cell motility
02040 Flagellar assembly
RND59_11160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vru03021
]
RND59_11160
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
vru02035
]
RND59_11160
Transcription machinery [BR:
vru03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RND59_11160
Bacterial motility proteins [BR:
vru02035
]
Flagellar system
Flagellar assembly proteins
Stator
RND59_11160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_23
UPF0122
GerE
HTH_10
Rv2175c_wHTH
MarR_2
UPF0175
Phage_terminase
Motif
Other DBs
NCBI-ProteinID:
WNJ94692
LinkDB
All DBs
Position
1:2437182..2437916
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AA seq
244 aa
AA seq
DB search
MNKALTYDQYGNINNQQAFLEKYSVLVKRIAHHLIGRLPPSVQVEDLIQAGMIGLLEAQK
NYDNSKGASFETYAGIRIRGAMLDDIRRGDWVPRSVHKYNREISQAISVLEGELNREPTD
TEVAKYLGMSLDQYHSVITDINSSRIVGIEDLGVSDDVISPFDSDDENSPFKGVADESFR
KALVESIKSLPEREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQTMQRLRTKLRSW
TQND
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
gtgaataaggcgctgacttacgatcaatatggaaatatcaataatcagcaggcttttctg
gaaaagtattctgtattggttaagcgtatcgcacaccacttgatcggacggttacctccg
agtgttcaggtcgaagatttaattcaagcgggaatgatcggactactcgaagcgcaaaaa
aactatgataatagtaaaggcgccagttttgaaacttacgcgggtattcgtattcgtggt
gcaatgttggatgatattcgtcgtggagactgggttccccgatctgttcataaatacaat
cgtgagatcagtcaggcaatttcggtacttgaaggtgaactaaatcgtgaaccgaccgat
acagaagttgctaagtatctgggaatgtcgttagatcaatatcatagcgtcattaccgat
ataaacagttcccgaattgttggtattgaagatttaggggtttctgatgacgtaatatca
ccttttgatagtgatgatgaaaactcaccatttaaaggtgttgctgacgaatcatttcgt
aaagcattggttgaatcaataaaatcgcttcctgaacgtgaagctttagtactttcgctc
tattatgatgaagagctaaacttaaaagaaattggtgaagtgcttggtgtaagtgaatct
cgcgtaagccaaatattaagccaaaccatgcagcgtttaagaacaaagctgcgttcttgg
acacaaaatgactaa
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