Vibrio ruber: RND59_11395
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Entry
RND59_11395 CDS
T09542
Name
(GenBank) pyridoxal-dependent decarboxylase, exosortase A system-associated
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
vru
Vibrio ruber
Pathway
vru00300
Lysine biosynthesis
vru00470
D-Amino acid metabolism
vru01100
Metabolic pathways
vru01110
Biosynthesis of secondary metabolites
vru01120
Microbial metabolism in diverse environments
vru01230
Biosynthesis of amino acids
Module
vru_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
vru00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
RND59_11395
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RND59_11395
Enzymes [BR:
vru01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
RND59_11395
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
WNJ94736
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All DBs
Position
1:2487146..2488402
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AA seq
418 aa
AA seq
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MKTSSQEVSNLSMQLAETFSIVDNCLEIGGISLERLAEQVGQKPFFVYSRRHIDERVNLL
REHIPPQVSIHYAVKANPFVPLVHYMASKVEGVDIASASELLIALNAGVDPQDISFAGPG
KNDADLKQAIAARILINVESENELHRIHAIAQTLNERARIALRINPDYRLNSSGMRMGGG
PLQFGMDVQYVKAVLGVVRDYPEYLQFEGFQIFPGSQNLNADHIIEAQHKALDLVITLAR
ESGVMVQRFNLGGGFGVPYFEGDQELDLPKIGLSMQQLVDKAEAAMPGVEIILELGRYLV
APAGIYVTKVVERKVSHDVVYLVTEGGMNHHLAASGHLGQLIRRNYPIVIGNRVAGETVE
KVNVVGPLCTPLDVLLNQGTLTVAHPGDLVAIFQSGAYGLSASPVGFLSQTQAVEILI
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacttcatctcaggaagtctcaaatttgtcgatgcaattagcggagacattttcg
attgtcgataattgtctcgaaattggagggatctctctggaaagacttgctgaacaagtc
gggcaaaaaccattcttcgtttattctcgtcgtcatattgatgagcgagtcaatttattg
cgagaacatattccccctcaggttagtattcattatgcggttaaagcaaacccgtttgtc
ccattagtccattatatggcaagcaaagttgaaggtgttgatattgcatctgcgagtgag
ttgttgatcgctttgaatgccggtgttgatccacaagatatcagctttgcgggaccggga
aaaaatgatgcggatttaaagcaggccattgctgcccgaatattaatcaatgttgaatcg
gaaaatgaattacaccgtattcatgctatcgcacaaaccttgaatgagcgtgccagaatc
gcactacgaattaatcctgattatcggttgaactcatcgggtatgaggatgggaggcggc
ccgttgcaatttggcatggacgtacaatatgtaaaagcggtgttgggcgtggttcgtgat
tatcctgaatatttacaatttgaaggctttcagatctttcccggctcccaaaatctgaat
gctgaccacattattgaagctcagcataaagcgttggatttagtgatcacactggcacgt
gagtctggtgttatggtgcaacgatttaatctgggagggggattcggtgtgccctatttt
gaaggcgatcaggaacttgatctgcctaaaattgggttgagtatgcaacagttggtcgat
aaagctgaagctgcaatgccgggtgtcgaaattatattggaactcggccgttatctggta
gcacctgccggtatatatgtcacgaaggtcgttgaaagaaaagtctcacatgacgttgtt
tacctcgtgacggaaggggggatgaatcatcatcttgctgcttccggtcatttaggacaa
ctcattcgcagaaattatccgattgtcatcggcaatcgggttgcaggagagacggtcgaa
aaagtgaatgtcgtcggtccgctttgtacaccgctcgacgttttgctgaatcaaggtact
ttgacagtagcccaccccggtgatctggtcgctatttttcaatctggtgcttatgggcta
tccgcgagtcccgttggatttttgagtcaaacacaagccgtagaaatactgatataa
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