Vibrio ruber: RND59_11740
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Entry
RND59_11740 CDS
T09542
Name
(GenBank) rhamnogalacturonan lyase B N-terminal domain-containing protein
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
vru
Vibrio ruber
Brite
KEGG Orthology (KO) [BR:
vru00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
RND59_11740
Enzymes [BR:
vru01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
RND59_11740
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GFIT
Motif
Pfam:
RhgB_N
CBM-like
fn3_3
CarboxypepD_reg
NPBW
Motif
Other DBs
NCBI-ProteinID:
WNJ94800
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Position
1:complement(2563409..2565082)
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AA seq
557 aa
AA seq
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MKKIKYISIIMWVLAACISSFSAQAAFQLSTSQDFYTVDTNAGVVFSIRRVDRGVSTQSP
GDLASLKINGVEYQNQRRGSQINSGFDWLYNNTSNVQVYAQNYQNQYIKITVQAGNLTHY
YMARNGYPYIYMATYFSSEPNIHGHVRYILRLHRNRLPYGPEPSDISQTVSTVESGDIFA
LSNGETRSKHYSNMRLKDWHAIGARGPNVGVWLVRDNHEGGSGGPFYRSLLNQGTATDQE
ITYIVNYAEAQTEAFRTGVLNHYTLVVNSGQQPPADEDINLSWFAQMGLKGYVPASNRGR
VAGVGIDGRDTNYEYTVGFANNRAQYWATANPASGYFSSDNMLPGTYTMTTYKNELAVNT
QTVTVRPGQTTVLNSYQITGDPSRDRAIWRIGDWDGSPQEFLNGDKLTTMHPSDVRMANW
NPSNFIVGNTPARAFPAYMWKDINNDHIIYFRLNDAQRAKAHRVRIGITVAYAGGRPKIS
VNNWTSSNPPPPTQPKTRTLTVGTYRGNNTTYTFDVPASAWASGNNWNRLVVTAISGSGL
SGYLSAGYSIDSIDLLD
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaatcaaatatatatcgataataatgtgggtgttagccgcctgcatatcgagc
ttcagtgcacaagccgcttttcagctatccacctctcaggatttttatacagttgatact
aatgccggtgtggtattcagtatacgcagagttgatcggggtgtgagtacacaatcaccc
ggtgatcttgcatcactcaagattaatggtgttgagtatcaaaatcagcgtagaggatct
cagattaattcgggatttgactggttatataacaatacatccaatgtacaggtttacgcc
caaaattatcagaatcaatatataaaaattacggttcaggctggcaatttaactcattat
tatatggcaagaaatggttatccatatatctatatggcgacttacttttcatctgaaccc
aatattcatggccatgtccgttatattttaagattgcatcgtaaccgcctcccttacgga
ccggaaccttctgatatttctcaaactgtatcaaccgttgaatcaggtgatatttttgca
ctctccaatggggaaactcgctctaaacattactccaatatgcggctaaaagattggcat
gccattggtgcgcgaggacccaatgtcggggtttggctggtcagggataatcatgaaggc
ggctccggcggcccattctatcgcagcctgctgaatcagggcacagcaaccgatcaagaa
attacctacatcgttaactatgccgaagctcagacagaagcctttcgtaccggtgtgctg
aatcattacacactggttgtcaatagcggccagcaaccccctgctgatgaggatattaac
ctctcttggtttgcacaaatggggctgaagggctatgttccggcatcaaacagaggtcgg
gttgcgggcgttggtattgacggacgcgacaccaattatgaatataccgttggttttgcc
aacaatcgcgcccaatattgggcaactgcaaatccggcaagtggttacttcagcagtgac
aatatgttaccgggcacttacacgatgaccacttataaaaatgaattggccgtcaacact
cagacagtgactgttcgtcccggtcagacaaccgttttaaactcctatcaaattaccgga
gatccaagccgtgatcgcgccatctggcggatcggtgactgggatggcagcccgcaagaa
tttctcaatggtgacaaattaaccaccatgcatccttcggatgtgagaatggcaaactgg
aatccgtctaactttatcgtcggtaatacgccggccagagcctttcctgcgtatatgtgg
aaggatatcaacaatgatcacattatttatttccgcctcaacgatgcacaacgagcgaaa
gcacaccgtgtccggatcggtattactgtggcctatgccgggggacgtcctaaaatttca
gtgaataactggacgtcgtcaaacccaccaccaccgacacaacccaagactcggacttta
accgtcggaacataccgaggaaacaatacaacttatacatttgatgtacctgcaagtgca
tgggccagcggtaataactggaatcggctggttgtcacagcaatcagcggctcaggacta
agtggttatctgtctgccggttatagtatcgatagtattgacttacttgattaa
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