Vibrio ruber: RND59_11745
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Entry
RND59_11745 CDS
T09542
Name
(GenBank) polysaccharide lyase family 1 protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
vru
Vibrio ruber
Pathway
vru00040
Pentose and glucuronate interconversions
vru01100
Metabolic pathways
vru02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vru00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
RND59_11745
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RND59_11745
Enzymes [BR:
vru01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
RND59_11745
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GFIT
Motif
Pfam:
Pectate_lyase_4
F5_F8_type_C
FGE-sulfatase
Motif
Other DBs
NCBI-ProteinID:
WNJ94801
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Position
1:2565634..2567163
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AA seq
509 aa
AA seq
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MMTKKQFQHTIVASLISSLAWAASPSFANGFHTENGGTTGGEGGQIVHATTGTQIHAALC
NRASSDTPIIIQVEGTINHGNTSKVSGNSCNTAADKIELKDISNVTLIGVGQGALFDELG
IHIRSSSNIIIRNVHVRNVKKSGSPTSNGGDAIGMEKDVSNVWVDHVTLEASGGESDGYD
ALVDMKNNTKYVTVSYSILRNSGRGGLVGSSDSDDNNGPVTFHHNYYENINSRTPLLRHA
TAHSYNNYYDGLISSGMNPRIGGKIKAENNYVKDSKDPLGTFYTNDMGFWDVSGNIWDNV
RWSNDGSKVHPAGPNPVSTTSIHIPYQYQPDQASCVPAIVMATAGANKNLAVSDGRCHVT
TPGNDQPGNGNGNGDGQNNGGDNGGSPSGSNLALNAAADGSSKGNGTSYGNVIDGDSSTY
WSPRGSTGTISIKRLNQTINAVRIVELSGTQGTVTAWSLVNHDDGTTLASGSSIPGMISF
PDTNLDKISFVIHSANGNPAIAEFEVYKN
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgatgaccaaaaaacaatttcagcacaccatagtcgcgtcattgatttcatcgctggca
tgggctgcatcaccttcatttgccaatggctttcataccgaaaatggtggcacaaccggt
ggtgaagggggacaaatcgtccatgcaacaacgggtacgcaaattcatgctgcgttatgt
aaccgggcttcaagtgatacaccgattattattcaggtcgaaggtactatcaatcatggt
aatacttcaaaggtttctggtaacagctgtaataccgcagcagataaaattgaactgaaa
gatattagtaatgttaccctgattggcgtcgggcaaggggcactcttcgatgaattaggt
attcatatccgctcttcatctaatattatcatccggaatgtgcatgtcagaaacgtgaag
aaatccggttctccgacgtcaaatggcggtgatgctatcgggatggagaaagatgtctca
aacgtctgggttgatcatgtcacattagaagcgagtggtggcgaaagtgatggctatgac
gctttggtagatatgaagaataataccaaatacgtgacggtttcttacagtattctgaga
aactctggccgcggcgggctggtgggctcaagtgatagtgatgataataacgggccggtg
actttccaccataactactatgagaacattaattcgcggacaccattattacgtcatgcc
acagcacattcttataataattactacgatggcttaatttcttcagggatgaacccaaga
atcggcggtaagatcaaagcagaaaataactatgtcaaagattctaaagacccgctcggt
actttctataccaatgacatgggattctgggatgtgagtggcaatatttgggacaatgtg
cgttggtctaatgatggcagcaaagtgcatccggctggcccgaacccggtttcaaccaca
tcgattcatattccttatcagtatcagcctgatcaggcaagctgtgtccctgcgattgtc
atggcgacagcgggtgccaataaaaatctggctgtatccgatggtcgttgtcatgtcact
acaccgggaaatgatcaaccgggcaatggtaacggtaatggtgatggccagaataacggt
ggtgataatgggggctcaccttcgggttcgaacctcgctttaaatgcggctgctgacggt
agctctaagggtaacggaaccagctatggcaatgtgattgatggggatagcagtacttac
tggtcaccaagaggcagcaccggaacgatcagtatcaaacgtctcaatcaaacgattaat
gcggtgcgcattgttgagttgtccggtactcagggaacggtgactgcttggtctttggta
aaccatgatgatgggacgacgctggcatcaggcagctcaattcctggcatgatctctttc
ccggatactaatctggataaaatcagttttgtgattcactccgccaacggtaatccggcc
attgctgagtttgaagtttacaaaaattaa
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