Vibrio ruber: RND59_12400
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Entry
RND59_12400 CDS
T09542
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vru
Vibrio ruber
Brite
KEGG Orthology (KO) [BR:
vru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vru03032
]
RND59_12400 (topA)
03400 DNA repair and recombination proteins [BR:
vru03400
]
RND59_12400 (topA)
Enzymes [BR:
vru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RND59_12400 (topA)
DNA replication proteins [BR:
vru03032
]
Prokaryotic type
DNA Topoisomerases
RND59_12400 (topA)
DNA repair and recombination proteins [BR:
vru03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RND59_12400 (topA)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
WNJ94930
LinkDB
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Position
1:2714413..2717043
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AA seq
876 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGRDYIVKSSVGHVRDLPTSGQASSTKKSTPVSTKHLSAE
EKERLKKEKERNALIKKMGVDPYHGWEANYQILPGKEKVVSELQKLAKDADCVYLATDLD
REGEAIAWHLREIIGGEEDRYKRVVFNEITKNAIQQAFQEPGELNMDGVNAQQARRFMDR
VVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEKEREIKAFVPEEFWDIHADTQTPDGNA
LRLLVAQKDGVAFKPLNEQDAKAAVSVLESAQYEVCKREDRPTSSKPSAPFITSTLQQAA
STRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVDAVRDYVQTNFGAAYLPDSPN
VYGSKAGAQEAHEAIRPSDVNVLADALEGMDADAHKLYTLIWNQFVACQMTPARYDSTTI
SVKAAEYTLKAKGRILKFDGWTRVQKPLGKNEDQILPGVQIGERLSLDALDPKQHFTKPP
ARYTEAALVKELEKRGIGRPSTYASIISTIQDRGYAKIEQRRFYAEKMGEIVTDRLDDSF
NDLMNYDFTARMEEKLDQIAEGNAKWKGVLDNFFSDFSVSLEQAEQQEEDGGMKPNHIVL
TNIECPTCSRPMGIRTASTGVFLGCSGYALPPKERCKTTINLGDEDGVINVLEEDVETAA
LRAKKRCPICETAMDAYLIDDKRKLHVCGNNPNCDGYIVEHGEFKVKGYDGPVVECDKCG
SDMVLKNGRFGKYMGCTNESCKNTRKILKNGEIAPPKEEPVHFPELPCEKSDAYFVLRDG
ASGLFMAASNFPKSRETRAPLVEEFARFEERIPDKFKYLASAPTHDPDGIPAVIRFSRKS
KEHYVRTEVDGKPTGWTVLYVDGQWQITDKRKKVKS
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcactggttatagtggagtctccagccaaagctaaaacgattaataaatat
cttggccgagactatattgtgaagtctagtgtcggtcatgtccgagatcttcctacctct
ggtcaagcaagttcaaccaaaaaatcaacacctgtttcaacgaaacatttaagtgcagaa
gagaaagaacgtttaaaaaaagagaaagaacgcaatgcgctgattaaaaaaatgggtgtt
gatccttaccatggttgggaagcaaattatcagatacttccgggcaaggaaaaagtcgtt
tctgaacttcagaagttagctaaagatgctgactgcgtttacctcgcaacggatttggac
cgtgagggggaagcgatcgcatggcatctgcgcgagattatcggtggagaagaggaccgc
tacaaacgcgttgtctttaatgaaatcaccaaaaatgcaatccaacaggctttccaggag
cctggtgaactgaatatggatggcgtgaatgctcagcaagcacgtcgttttatggatcgt
gttgtgggattcatggtttctccgctgctgtggaagaaagttgcccgcggtctgtcggct
ggtcgggttcagtctgttgcggtcaagctactggttgaaaaagagcgagaaattaaggcg
tttgtaccggaagagttttgggatattcacgccgatacccaaacgccggatggcaatgct
ctgcgactgcttgttgcacagaaagacggtgtggcatttaagccactgaatgagcaggat
gccaaagctgcggtgagtgtgcttgaatcggcacaatatgaggtgtgtaagcgggaagac
cgccccacatcgagcaaaccgtctgcgccatttattacctcgacattgcaacaagccgca
agtacgcgtttgggatatggtgtaaagaaaaccatgatgctcgcgcaacgtttgtatgaa
gccggatatatcacttatatgcggacggattcaaccaatttgagtgctgaagcagtcgat
gctgttcgggattatgtgcagaccaatttcggcgcagcctatctacccgacagcccgaat
gtgtatggcagcaaagcgggggcacaagaggctcatgaagcgattcggccttcggatgtc
aatgttctggctgatgcactggaagggatggatgcagatgcgcataaactgtacacctta
atctggaatcagtttgttgcctgtcaaatgacacctgcccgctatgactcaaccacaatt
agtgtcaaagctgctgaatacacgctgaaagcgaaagggcgtattctgaagtttgatggc
tggactcgtgttcagaaaccattgggcaagaatgaagatcaaattttgccgggtgtacaa
attggtgaaaggttgtctttagatgcgttggatccaaagcaacactttacgaaaccgccg
gcgagatataccgaagccgcactggtaaaagagcttgagaagcgagggattggccgacca
tcaacttatgcgtcgattatctccacgattcaggatcgtggctacgcaaaaattgagcaa
cgacgcttttacgcagaaaaaatgggtgagattgttacggatcgtttagatgatagtttt
aatgatctgatgaactatgattttaccgcccgcatggaagagaagctggaccagattgct
gaaggaaatgcgaaatggaaaggtgttcttgataactttttcagtgatttttccgtctcc
cttgagcaggctgaacaacaagaagaagacggcgggatgaagccgaatcatattgttctg
accaatattgagtgtccgacctgctctcgacctatgggaattcgtacggcttcgaccgga
gtattccttggctgttccgggtatgctttaccaccaaaagagcgttgtaagacgacaatt
aatttgggggatgaggacggcgtcattaatgtccttgaagaggatgttgaaacggctgcc
ttgcgggcgaaaaaacggtgtccgatttgtgaaaccgccatggatgcttatctgatcgat
gataagcgcaagttacatgtttgtggtaacaatccgaattgtgacgggtatatcgtcgaa
catggtgagtttaaggtcaaaggatacgacgggcctgttgttgaatgtgacaaatgtggt
tcagatatggtgctgaaaaacggtcgtttcggtaaatatatgggatgcaccaatgagtca
tgtaaaaatacccggaaaattctgaaaaacggtgaaatagcgccacccaaggaagagccg
gtgcatttccctgaattaccgtgtgagaagtcggacgcttactttgttttacgtgatggt
gcatccggactatttatggctgccagtaacttcccgaaatcaagagaaacccgggcaccg
ttagttgaagaatttgcgcgttttgaagaacgaattcccgacaagtttaaatatttggct
tctgcgccgactcatgaccccgatggcatacccgctgtgattcggtttagccgtaaatcg
aaagagcactatgtgcgtaccgaagtcgatggcaaaccgaccggttggacggttctttat
gtcgatggtcaatggcagatcacagataagagaaaaaaagtgaaatcataa
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