KEGG   Vibrio ruber: RND59_14060
Entry
RND59_14060       CDS       T09542                                 
Name
(GenBank) 3'-5' exonuclease
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
vru  Vibrio ruber
Pathway
vru03030  DNA replication
vru03430  Mismatch repair
vru03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vru00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RND59_14060
   03430 Mismatch repair
    RND59_14060
   03440 Homologous recombination
    RND59_14060
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vru03032]
    RND59_14060
   03400 DNA repair and recombination proteins [BR:vru03400]
    RND59_14060
Enzymes [BR:vru01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     RND59_14060
DNA replication proteins [BR:vru03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     RND59_14060
DNA repair and recombination proteins [BR:vru03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     RND59_14060
SSDB
Motif
Pfam: RNase_T RNase_H_2 CAF1 Rv2179c-like
Other DBs
NCBI-ProteinID: WNJ95240
LinkDB
Position
1:3119935..3120657
AA seq 240 aa
MLKKLLKAPSIDWQKKYQLKQKRVTHPSLNYFYQQLLPDADTPIEEIEFLALDFETTGLN
PAKDEIVTIGAVPFTLDRIKLSQCKHWLVKPRRPLKESSIIVHGITHTDIMDAPDLNEFL
DEILHLMAGKVIVVHYYPIERQFLDQALKKRIKEGIEFPVVDTMNIEERVLLQQSGGILN
LMNSFKKKPSVRLGNTRERYGLPLYPLHDALLDALATAELLQAQIANHYARTQAISDFWV
NT seq 723 nt   +upstreamnt  +downstreamnt
atgctaaaaaaattattgaaagcccccagtattgactggcaaaaaaaatatcaactcaaa
cagaaacgggtcacgcacccgtctctcaattatttctatcaacaattactgccggatgca
gacaccccgattgaggaaatcgagtttctggcgcttgattttgaaaccacgggactgaat
ccagccaaagatgaaatcgtgacaataggagccgtcccttttaccttggatcgcattaaa
ttgagtcagtgtaaacattggctggtaaaacctcgtcgtcctttgaaagaatcttccatt
attgtgcatggtattacgcatacggacatcatggatgcaccagatttaaacgagtttctt
gatgaaattctgcacctgatggcaggaaaagtgatcgtcgtccattactacccgatagag
cgtcaattcctcgatcaagcactgaaaaagagaattaaagaagggattgagttcccggtt
gtagataccatgaatatcgaagaacgagttttgcttcagcaatccggtggtattctcaat
ctgatgaatagttttaagaaaaaaccgtcagtgcgattgggaaatacgagagaacgttac
gggctgccactctatccactgcacgatgccctacttgacgctcttgctaccgctgagctg
cttcaggcacagattgccaatcattatgcccgcactcaggcaatcagtgacttttgggta
taa

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