Vibrio ruber: RND59_16410
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Entry
RND59_16410 CDS
T09542
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
vru
Vibrio ruber
Brite
KEGG Orthology (KO) [BR:
vru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vru03000
]
RND59_16410
Transcription factors [BR:
vru03000
]
Prokaryotic type
Helix-turn-helix
Other families
RND59_16410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
GAF
HTH_8
AAA_5
AAA_2
HTH_30
AAA
Mg_chelatase
nSTAND6
HTH_7
AAA_3
HTH_23
AAA_19
AAA_PrkA
HTH_28
HTH_29
HTH_22
MCM
HTH_11
DUF4172
AAA_7
HTH_Tnp_ISL3
HTH_17
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
WNJ98087
LinkDB
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Position
2:149306..151123
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AA seq
605 aa
AA seq
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MQHVQFSAGDWLTSSWDRCHQAGLKQRRQPENIIMSSAELKARKWSVNPLIQAVENYAVP
LFNQMFAHSDSRLILTDHDGVILASWGQPRFKERLTQIALDNGVCWQENLKGTNAIGTAI
VEARPLTIIGNQHYVHQHQFISCSASPVFNHQGQLIGILDITSEQQQHDLSTQMLVQNMV
QQVENHLLCNIPDGAVKINLACEKHLLNSGWQGVLITDTSGKILAHNHIAFQLLEHPNIV
GLSVEHLLQQQDRALVFEKHTLQSSEKKSSAFHSANAFTTSCELHFGDDRIEQAWQQAHK
LIDQDIPLLILGETGVGKNEFVKALHQHSSRQHRPLMIVNCGAIPKDLIESELFGYVAGA
FTGASPKGYQGKIRQAHQGILFLDEIADMPLDAQCRLLHVLQEKEVIPVGSGQSEQVDIQ
VIAATHKDLTAEVEAGRFRQDLYYRLNGLVLELPALRERQDKAQLIEHIHRQYRLNQQQI
CPQLLQVLQDYRWPGNIRELDNMLKVTCLLTSDEPLLKLAHIPGHILKSLTISASAATTP
SIQLAEPPLEVSETHRMPDLKTTVESRLLQTYQATQGNISQTSRLLGVSRNTIYRKLKTL
GILSC
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgcaacatgttcaattttctgccggagactggttgacatcatcttgggatcgatgtcat
caggctggtttaaaacagcgtagacagcctgagaatatcatcatgtccagtgccgagctc
aaagcgcgaaaatggtcggttaacccgctgatccaagcggtcgagaattatgcggtaccg
ttgtttaatcagatgtttgctcacagtgacagccgtctgatcctcaccgaccatgatggg
gtgattctggcgagctggggacaaccgcgttttaaagaacggctcacccagattgcactc
gataatggcgtctgctggcaagaaaaccttaaaggtaccaatgccatcggcaccgccata
gttgaagccagaccattaacgatcatcggtaatcagcactacgtgcatcaacaccagttt
attagctgctccgccagcccggtcttcaaccatcaggggcaactcatcgggattctggac
attaccagcgaacaacagcaacacgacctctcaacacaaatgctggtgcagaacatggtt
cagcaggtagaaaatcatctgttatgcaatattcccgacggtgcggttaaaatcaatctg
gcctgtgaaaaacacttactcaacagtggctggcagggcgtattgattaccgacacatcc
ggcaaaattctcgctcataatcatattgcctttcagttacttgaacaccctaacattgtc
ggtctctccgtcgagcatctgttacaacagcaagaccgtgcgctggtttttgaaaaacat
acgctccagtcgtctgaaaaaaaatccagtgcgtttcactcagccaatgcgttcactacc
tcgtgtgaactccatttcggtgatgaccgaattgagcaggcctggcaacaggctcataaa
ctgatcgatcaggacattcctctgctgattttgggagaaaccggggtcggtaaaaatgaa
ttcgtcaaagcgctacaccaacacagctcacgacagcatcgtccgctaatgattgtcaac
tgtggtgcgatccccaaagatctgattgaatccgaactgttcgggtatgttgccggtgcc
ttcaccggtgccagtcccaaaggctatcagggtaaaattcgccaagcacatcagggaatc
ctgtttctggatgaaattgcagatatgccactggacgcgcagtgtcgcctgctgcatgta
ttacaagaaaaagaagtgatacctgtcgggtcaggtcagagtgagcaggttgatattcag
gtcatcgcagccacccataaggatttaaccgcagaagtcgaagccgggcgattccgtcag
gatctctactacaggctcaatgggctggtactcgaacttcccgcgttgcgagagcggcaa
gataaagcacaattgattgagcatattcaccgccaatatcgtctcaatcagcaacagatt
tgtccgcaattattgcaagttctgcaagattatcgctggccgggcaatatccgtgaactg
gataatatgttgaaagttacctgtctgctcaccagcgacgaaccgctgttaaagctggca
catattcccggccatatcctgaaatcgttaacaatatctgcatcggcagccacaacgcca
tcgattcaattggctgagccaccgcttgaagtcagtgaaacacaccgaatgcccgatttg
aaaaccacggtagaaagtcgcctgctgcaaacctatcaggcaactcaggggaatatcagc
cagacctcacggttactcggggtcagtcgtaataccatttatcgcaaactcaaaacgctc
ggtattttgagttgctaa
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