Vibrio ruber: RND59_20490
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Entry
RND59_20490 CDS
T09542
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vru
Vibrio ruber
Pathway
vru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RND59_20490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vru03019
]
RND59_20490
03009 Ribosome biogenesis [BR:
vru03009
]
RND59_20490
Enzymes [BR:
vru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RND59_20490
Messenger RNA biogenesis [BR:
vru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RND59_20490
Ribosome biogenesis [BR:
vru03009
]
Prokaryotic type
rRNA helicases
RND59_20490
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
WCX
Motif
Other DBs
NCBI-ProteinID:
WNJ97576
LinkDB
All DBs
Position
2:complement(1082824..1084668)
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AA seq
614 aa
AA seq
DB search
MQDNVIQFKELALKNEILSALENMGFVSPTPIQAAAIPFLLEGRDALGKAQTGTGKTAAF
SLPLLNKLIMNQHKPQAIVMAPTRELAIQVAAEIKTLGQNIAGLKVLEIYGGASIVDQMR
ALRAGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPES
AQRVLFSATMPPMVKDIVDRFLRDPARVDVAGANQTVAKVEQQFWVVKGVEKDEAMARLL
ETEETDASIVFVRTRQDTERLADWLSSRGFKATALHGDIPQSLRERTVEHIKKGVTDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTRSSMEEIQLPHRDKVAQARLVQLSQELETEKEHKALEKFSELVESLRDSLDIDTTT
LAAMLLKRQQGKRPLFYVGEDPMIAEIEREKSRRRERREGGTNNNRRGYGQDTQDWDTYQ
LQVGREQGVQVKDIVGALANELGLGKNSIGAIKLAQGHTFVQLPKSMSSDVTRKLRKLRI
RQKDVGAVVCDFDDFRESRGRRDGGANRDSRGEGRGFRENGRREGERRFDRNRGGDNRGS
YRGERGHSRRRTEA
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgcaagataatgtgattcaatttaaagaattagcgctcaaaaacgaaatcctctccgct
ctggaaaatatgggcttcgtttctcctacacccattcaggctgctgcaattccatttttg
ttggaaggtcgtgatgctttaggtaaagcacaaaccggtaccggaaaaaccgcagcattc
tctctacctctgctcaacaaactgattatgaatcagcataagcctcaggcgattgtgatg
gcaccgacgcgtgagctggcaattcaggttgcagcagaaatcaaaaccttaggtcaaaat
attgccggcctgaaagtgttagaaatttatggtggcgcatcgatcgttgatcagatgcgt
gcactcagagctggtgctcatatcgtcgtcggtacaccgggacgggttaaagatttaatt
acccgtgatcgtctccatttagatgagtgccacaccttcattctcgatgaagctgatgaa
atgctgaaaatgggtttcgtcgatgatgtgacttggattatggaacaagcccctgaaagt
gctcagcgtgttttgttctcagcaacgatgccgccaatggtgaaagatatcgttgaccgt
ttcctgcgtgatccggctcgggttgacgtcgccggtgcaaaccagactgttgcaaaagta
gagcagcaattctgggttgtgaaaggtgttgaaaaagacgaagccatggctcgcttgctt
gaaacggaagaaacggatgcatcaattgttttcgtccgtacccgtcaagataccgaacgt
ctggctgactggctgtcttctcgtggattcaaagcaacagctttgcatggtgatattcct
cagtctctgcgtgaaagaacagttgagcatatcaaaaaaggtgtgactgacattctggtt
gcgactgatgtggttgctcgtgggctggatgtgccgcggattacgcacgtattcaactat
gatatcccgtttgacgtagaatcttatattcaccgtatcggccgtaccggtcgtgccgga
cgcaaagggaaagcgatcctgttggtccgtaccaatcagatccgcatgttgcgtaccatt
gagcgggttacacgttcttctatggaagaaattcagttaccgcatcgtgacaaagttgct
caggcgcgtttagtgcagctgagtcaggaacttgaaactgaaaaagaacataaagccttg
gaaaaattttccgagctggttgaaagcctcagagattctctggacattgatacgaccaca
ctggcagcgatgttactgaagcgtcaacagggtaaacgcccattattctatgtcggcgaa
gatccaatgattgctgagattgagcgtgagaaatcacgtcgtcgtgagcgtcgtgaaggc
ggcactaataataaccgccgtggatatggtcaggatactcaagactgggatacctaccag
ctgcaagtcggccgtgaacaaggtgtgcaggtaaaagatattgtcggtgcactggcaaac
gagctgggtcttggcaaaaattcaattggtgcgattaaactggcacagggccatacgttt
gttcagttaccaaaaagtatgtcttcagatgtgacccgcaagttacgcaaactgcggatt
cgtcagaaagatgttggtgcggttgtgtgtgactttgatgatttccgtgagtcgcgtggt
cgtcgtgatggcggtgcgaaccgcgacagtcgtggcgaaggacgtggtttccgtgaaaat
ggccgccgtgaaggtgagcgtcgttttgatcgcaaccgtggcggagataaccgtggttct
taccgtggtgagcgtggtcatagccgacgtcgtaccgaagcataa
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