Aliivibrio salmonicida: VSAL_I0017
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Entry
VSAL_I0017 CDS
T00782
Symbol
groL1
Name
(GenBank) 60 kda chaperonin 1
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
vsa
Aliivibrio salmonicida
Pathway
vsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VSAL_I0017 (groL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsa03019
]
VSAL_I0017 (groL1)
03110 Chaperones and folding catalysts [BR:
vsa03110
]
VSAL_I0017 (groL1)
03029 Mitochondrial biogenesis [BR:
vsa03029
]
VSAL_I0017 (groL1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vsa04147
]
VSAL_I0017 (groL1)
Enzymes [BR:
vsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
VSAL_I0017 (groL1)
Messenger RNA biogenesis [BR:
vsa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
VSAL_I0017 (groL1)
Chaperones and folding catalysts [BR:
vsa03110
]
Heat shock proteins
HSP60 / Chaperonin
VSAL_I0017 (groL1)
Mitochondrial biogenesis [BR:
vsa03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
VSAL_I0017 (groL1)
Exosome [BR:
vsa04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
VSAL_I0017 (groL1)
Exosomal proteins of other body fluids (saliva and urine)
VSAL_I0017 (groL1)
Exosomal proteins of breast cancer cells
VSAL_I0017 (groL1)
Exosomal proteins of colorectal cancer cells
VSAL_I0017 (groL1)
Exosomal proteins of bladder cancer cells
VSAL_I0017 (groL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
CAQ77702
UniProt:
B6ENX0
LinkDB
All DBs
Position
1:complement(17172..18809)
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AA seq
545 aa
AA seq
DB search
MAAKDVKFGNDARIKMLEGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREI
ELEDKFQNMGAQMVKEVASQANDAAGDGTTTATVLAQAIIAEGLKAVAAGMNPMDLKRGI
DKAVIAAVEALKDLSVPCADTKAIAQVGTISANSDYTVGNLIAEAMEKVGRDGVITVEEG
QSLQDELDVVEGMQFDRGYLSPYFVNNQEAGSVDLDSPFILLVDKKVSNIRELLPTLEAV
AKASRPLLIIAEDIEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAALTAGSV
ISEEIGLELEKVVLEDLGQAKRVTITKETTTIIDGAGDETIISGRVSQIRQQIEDATSDY
DKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALI
RAASKVVNLEGDNEEQTVGIRLALRAMEAPLRQIVKNAGEEDSVVANNVRAGEDNYGYNA
ATGVYGDMIEMGILDPTKVTRSALQFAASVAGLMITTEAMITDKPQDSSSSMPDMGGMGG
MGGMM
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atggctgctaaagacgttaaatttggtaatgacgcacgaatcaaaatgctagaaggtgta
aatgttctggctgatgcggttaaagtaactttgggtcctaagggtcgtaacgttgtttta
gataaatcatttggcgcaccaacgatcactaaagatggtgtttctgttgcacgtgaaatc
gaacttgaagataagttccaaaacatgggcgcacaaatggttaaagaagtggcttcgcaa
gcgaatgacgcggcgggcgacggaacaacaacggcaaccgttcttgctcaagctatcatt
gctgaaggcctaaaagccgttgctgcgggtatgaacccaatggatcttaaacgtggtatc
gacaaagcagttattgctgctgttgaagcacttaaagatctatctgttccatgtgctgat
acaaaagcgatcgcgcaagtaggtactatctctgcaaactctgattatactgttggtaat
cttattgctgaagcaatggaaaaagtaggtcgtgacggtgttatcactgttgaagaaggc
caatctcttcaagacgaattagacgttgttgaaggtatgcagtttgatcgcggttaccta
tctccatatttcgtaaacaaccaagaagccggttctgttgatctagacagcccattcatc
ttgcttgttgataaaaaagtatcaaacatccgtgaattgcttccaactctagaagcagta
gcgaaagcatctcgtcctcttcttatcatcgctgaagatattgaaggcgaagcgcttgct
actctagttgtgaacaacatgcgtggtatcgttaaagttgcagcggttaaagcacctggt
tttggtgaccgtcgtaaagcaatgttacaagatatcgcggcattaactgcgggctctgta
atttcagaagagatcggtttagaacttgaaaaagtagttcttgaagatcttggtcaagcg
aagcgtgtaactattacaaaagaaacaacaactatcatcgatggtgctggtgatgagact
attatctctggccgtgtttctcaaattcgtcaacaaatcgaagatgcaacctctgactac
gataaagaaaaacttcaagagcgtgtagctaaattggctggcggtgttgcagtgatcaaa
gtgggtgcggcgactgaagttgagatgaaagagaagaaagaccgtgttgaagatgcactt
cacgcgactcgcgcagccgttgaagaaggtgttgttgctggtggtggtgttgcacttatc
cgtgctgcgtctaaagttgttaaccttgaaggtgacaatgaagagcaaactgtgggtatt
cgtttagcacttcgtgctatggaagcaccacttcgtcaaatcgttaaaaacgcaggtgaa
gaagattcagttgttgctaacaacgttcgcgctggtgaagataactacggttacaacgca
gctactggcgtttacggcgacatgatcgaaatgggtattcttgacccaactaaagtaacg
cgttctgcacttcagttcgcagcatcggttgcgggtcttatgatcacaacagaagcgatg
atcactgataagccacaagattcaagttcttctatgccagatatgggcggcatgggcggc
atgggcggcatgatgtaa
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