Aliivibrio salmonicida: VSAL_I0148
Help
Entry
VSAL_I0148 CDS
T00782
Symbol
rho
Name
(GenBank) transcription termination factor rho
KO
K03628
transcription termination factor Rho
Organism
vsa
Aliivibrio salmonicida
Pathway
vsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VSAL_I0148 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vsa03021
]
VSAL_I0148 (rho)
03019 Messenger RNA biogenesis [BR:
vsa03019
]
VSAL_I0148 (rho)
Transcription machinery [BR:
vsa03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
VSAL_I0148 (rho)
Messenger RNA biogenesis [BR:
vsa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VSAL_I0148 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA_25
OB_RNB
AAA
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
CAQ77833
UniProt:
B6EPA6
LinkDB
All DBs
Position
1:187298..188557
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNRPVSDLVALGESLGLENLARLRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADCSYLAGPDDIYVSPSQIRRFNLRTGDTIGGKIRPPKDGERYFALLKVNAVN
YDRPDNARNKILFENLTPLHANDRLRMERGNGSTEDITARILDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAHNYPECELMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGIDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRIFPAIDF
NRSGTRREELLTKTDELQKMWILRKIVHPMGESDAMEFLIDKLSMTKTNNEFFDAMRRQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttactgaacttaaaaacagaccagtgtctgaccttgttgctcttggcgaatca
ttaggcctagaaaacctagctcgtctaagaaaacaagacatcatcttctccatccttaag
caacatgcgaaaagcggtgaagacatctttggagatggtgtacttgagattcttcaagat
ggctttggtttccttcgttcagcagattgttcttacttggctggcccggatgacatctat
gtctctccaagccaaattcgtcgctttaacttgcgtactggtgatacgattggcggaaag
attcgtccaccaaaagatggcgaacgttatttcgctcttcttaaagtaaacgctgttaat
tatgatcgcccagataatgctcgtaacaaaatcctttttgaaaaccttacccctttacac
gcaaacgatcgtttacgtatggaacgtggtaatggttcaacagaagatattacggcgcgt
attcttgatttagcttctccaattggccgtggtcaacgtggtctgattgttgctccgcca
aaagcgggtaaaacaatgctacttcaaaacatcgctcaaagtattgctcacaactaccca
gaatgtgagttgatggttctacttatcgatgaacgtccagaagaagtaactgagatgcaa
cgccttgttaaaggtgaagtaattgcgtctacgtttgatgagccagcgtctcgtcacgta
caagttgctgaaatggttatcgagaaagcgaaacgtcttgtagagcataaaaaagacgtg
gttatcctattggattcaattactcgtcttgctcgtgcatacaacaccgttattccatca
tcaggtaaagttcttactggtggtattgatgcaaacgcattacaccgccctaaacgcttt
tttggtgcagcacgtaacgttgaagaaggtggcagtttaactatcattgcaacggcactt
gttgataccggctctaaaatggatgaagttatctacgaagagtttaaaggtacgggtaac
atggaattgcatttaaaccgtaaaattgcggaaaaacgtatattcccagcgattgacttt
aatcgttctggtactcgtcgtgaagagttgctaactaagactgatgaattacagaaaatg
tggatcctacgtaagattgttcatccaatgggtgaaagtgatgcgatggaattcctaatt
gataaactatcaatgacaaaaacgaacaatgagttctttgacgcgatgcgtcgccagtaa
DBGET
integrated database retrieval system
