Aliivibrio salmonicida: VSAL_I0222
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Entry
VSAL_I0222 CDS
T00782
Symbol
uvrD
Name
(GenBank) DNA helicase II UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vsa
Aliivibrio salmonicida
Pathway
vsa03420
Nucleotide excision repair
vsa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vsa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VSAL_I0222 (uvrD)
03430 Mismatch repair
VSAL_I0222 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsa03400
]
VSAL_I0222 (uvrD)
Enzymes [BR:
vsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VSAL_I0222 (uvrD)
DNA repair and recombination proteins [BR:
vsa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VSAL_I0222 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
VSAL_I0222 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
PhoH
DEAD
Motif
Other DBs
NCBI-ProteinID:
CAQ77907
UniProt:
B6EPK3
LinkDB
All DBs
Position
1:264252..266456
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AA seq
734 aa
AA seq
DB search
MDVSFLLDGLNDKQREAVAAPLENMLVLAGAGSGKTRVLVHRIAWLMQIEQASPFSIMSV
TFTNKAAAEMRGRIEELMHGSAGGMWNGTFHGICHRILRAHYLDAKLPEGFQIIDSDDQQ
RLLKRLIKAQNLDDKNWPARQAAWFINGKKDEGLRPHQINSFNDPIAETWLKVYRAYQEA
CDRSGLVDFAEILLRAHELLRDHQYICEHYQARFKHILVDEFQDTNNIQYAWLRMMAGSD
CKVMIVGDDDQSIYGWRGAQIENIQRFLNEFVGAKTILLEQNYRSTANILNAANELISNN
TERMGKELWTEDADGELISIYSAYNEMDEARFAVGKIKEWRDNGGALEDTAFLYRNNAQS
RVLEEALIQAGLPYRIYGGMRFFERQEIKDALSYLRLMNNRNDDAAFERVVNTPTRGLGD
KTLETVRLAARERGATMWQASIALIEEQVLPGRAAGALGRFVELINALEDDTRDCRLHEQ
TDQVIKSSGLFTMYEQEKGEKSKARIENLEELVTATRQFDKPEEAEEMTDLTAFLTHAAL
EAGDGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCY
VGMTRAMEKLYILYAETRRVYGQEKFHKPSRFIKEISAKFVEEVRMKAKVSRTSLYGSYG
SQSESSQERFGQTAMSNSFNETGYNLGQRVKHPKFGEGTIINFEGAGPQGRVQVAFNGEG
IKWLVTQYAKLESV
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcttttcttcttgatggtcttaatgacaaacagcgcgaagccgtagccgct
ccgttagaaaacatgcttgtacttgcgggtgccggtagtggtaaaactcgagtacttgtt
catcgtatcgcatggttaatgcaaatcgagcaagcgtcgcccttctcaattatgtcggtg
acatttaccaataaagccgccgctgaaatgcgtggtcgtattgaagaattaatgcatggc
agcgcagggggaatgtggaacggtacttttcatggtatttgtcaccgtattcttcgtgct
cattatcttgatgcgaaactgcctgaaggttttcagatcatcgactctgatgatcaacaa
cgcttattaaagcgtttgattaaagcgcagaacttggatgataaaaactggcctgcacgt
caagctgcatggttcatcaatgggaaaaaagatgaaggtttacgcccgcatcaaattaac
tcatttaatgatcctatcgctgaaacatggttaaaagtgtatcgcgcttatcaagaagct
tgtgatcgttcaggcttggtcgattttgctgaaattcttcttcgtgctcatgaactattg
cgtgatcatcagtatatctgcgaacactaccaagctcgctttaagcacattcttgtcgac
gaattccaagatacgaacaacattcaatatgcatggctacgtatgatggcaggctcggat
tgtaaggtcatgatcgttggggatgatgatcaatcaatctatggttggcgtggtgctcaa
attgaaaatattcaacgattcttaaatgaatttgttggtgctaaaaccatccttttagag
caaaactaccgttcaacagccaatatattgaatgctgccaatgaattgatcagtaacaat
accgagcgaatgggcaaagagctgtggactgaagacgctgatggcgagttgatttcaatc
tattcagcttacaatgaaatggacgaagctcgttttgcggttggaaaaattaaagaatgg
cgcgataacgggggagcattagaagataccgctttcttatatcgtaataatgctcaatct
cgagttcttgaagaagccttaatacaagcaggtttaccttatcgtatttatggtgggatg
cgattctttgaacgtcaagaaatcaaagatgcactgtcctacttacgtttaatgaataat
cgtaatgatgatgctgcgtttgaacgtgtcgtaaatacgccaacacgaggcctaggtgac
aaaactctggaaactgtgcgtttggcagcgcgtgaacgtggtgcaaccatgtggcaagca
agtattgccttaatcgaagaacaagtattacctgggcgtgcggcgggagcgttaggtcgt
ttcgttgagctaattaatgcgctagaagatgatacacgtgattgccgtctgcatgaacaa
actgaccaagtgattaaaagctcgggtttgtttactatgtacgaacaagaaaaaggcgaa
aaatcgaaagcgcgtattgaaaacttggaagaattagtgaccgcaacgcgtcaatttgat
aaacctgaagaagcagaagaaatgacggatttaaccgcattcttgacgcatgccgcatta
gaagcgggtgatggtcaggcggatgaatttgaagatgcggtgcaattaatgacgttgcac
agtgcaaaagggttagagtttcctttggtctttatggtgggtgttgaagagggtatgttc
ccaagtcaaatgtcagcagaagaagcagggcgtttagaagaagaacgtcgtctttgttat
gttggtatgactcgtgcgatggagaagctctatattctttacgcagaaactcgtcgagtg
tatgggcaagagaaatttcataagccatcacgctttattaaagaaatctcggcaaagttt
gttgaagaagttcgcatgaaagcaaaagtcagccgaaccagtttatatggtagctatggc
tctcaaagtgagtcatcccaagagcgttttggtcaaacggcaatgagtaatagctttaat
gaaacgggctacaatttagggcagcgagtgaagcatcctaaatttggtgaaggaacgatc
atcaattttgaaggtgctggcccacaagggcgtgttcaggttgcttttaatggtgaaggg
atcaaatggcttgtaacgcaatacgcgaaattagagtcggtgtaa
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