Aliivibrio salmonicida: VSAL_I0344
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Entry
VSAL_I0344 CDS
T00782
Symbol
rpoA
Name
(GenBank) RNA polymerase alpha-subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
vsa
Aliivibrio salmonicida
Pathway
vsa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vsa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VSAL_I0344 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vsa03021
]
VSAL_I0344 (rpoA)
03400 DNA repair and recombination proteins [BR:
vsa03400
]
VSAL_I0344 (rpoA)
Enzymes [BR:
vsa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VSAL_I0344 (rpoA)
Transcription machinery [BR:
vsa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VSAL_I0344 (rpoA)
DNA repair and recombination proteins [BR:
vsa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VSAL_I0344 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
CAQ78029
UniProt:
B6EPU9
LinkDB
All DBs
Position
1:375805..376794
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AA seq
329 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQVSLTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IEGVLHEYSTKEGVQEDILEILLNLKGLAVKVEGKDEVIITLNKSGAGPVVAGDITHDGD
VEIANPEHVICHLTDDNAEISMRIKVERGRGYVPSTARIHTEEDERPIGRLLVDATYSPV
DKISYAVEAARVEQRTDLDKLVIDMETNGTLDPEEAIRRAATILAEQLDAFVDLRDVRVP
EEKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIAED
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgtaacagaatttctaaagccgcgtctagttgacattgaacaagttagc
ctgactcacgcaaaagtaactcttgagccattagagcgtggtttcggccatactctaggt
aacgctctacgtcgtattttactatcttcaatgccgggttgtgccgtaactgaagtagaa
atcgaaggcgtattacatgagtacagcaccaaagaaggtgttcaggaagatatccttgaa
atccttctaaaccttaaaggcctggccgttaaggttgagggtaaagatgaagttatcatt
actcttaacaagtctggtgcaggccctgttgttgcaggtgacatcacccatgatggtgat
gttgagattgcgaacccagagcatgtaatctgccacttaactgatgacaatgctgaaatc
agcatgagaatcaaggtagagcgtggtcgcggctatgtaccgtcaacagctcgtatccat
actgaagaagatgagcgtccaatcggtcgtttgcttgtcgatgcaacttatagcccagta
gataaaatatcttatgcggttgaagcggcacgtgtagagcaacgtactgacttagacaaa
cttgttatcgatatggaaacgaatggtacgcttgatcctgaggaagctatccgtcgtgca
gctacaattttagctgaacaattggatgcatttgtagatcttcgtgatgtacgagttcct
gaagaaaaagaagaaaagccagagttcgatccgatcctactgcgtcctgtagacgatctt
gaactaacggttcgctctgctaactgtttgaaagcagaagcgattcactacattggtgat
ctggtgcagcgcactgaggttgagttacttaaaactccaaaccttggtaagaaatcttta
actgaaattaaagatgttctagcttcacgtggtctttctttaggcatgcgcctagagaac
tggccaccagcgtctatcgctgaagattaa
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