Aliivibrio salmonicida: VSAL_I0498
Help
Entry
VSAL_I0498 CDS
T00782
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor (sigma-N)
KO
K03092
RNA polymerase sigma-54 factor
Organism
vsa
Aliivibrio salmonicida
Pathway
vsa02020
Two-component system
vsa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vsa00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
VSAL_I0498 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
VSAL_I0498 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vsa03021
]
VSAL_I0498 (rpoN)
Transcription machinery [BR:
vsa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VSAL_I0498 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
Motif
Other DBs
NCBI-ProteinID:
CAQ78183
UniProt:
B6EMA2
LinkDB
All DBs
Position
1:complement(557544..559013)
Genome browser
AA seq
489 aa
AA seq
DB search
MKASLQLKMGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLDVEEEQLSTPESL
LSPEPTPEKETATAEQEPSVTDSSDVIDSNNISEELEMDASWDDVYSANSGSTGLAIDDD
TPLYQGETTESLQDYLMWQAELTPFTEVDRAIATTIIESLDEYGYLTISLDDVLESIGNE
EVELDEVEAVLKRIQHFDPLGVASRDLAECLMIQLATYPVDTPWLPETQLILTKHINLLG
NRDYRQLAKETKLKEYDLKQVMMLIHQLDPRPGNRVIDTDTEYVIPDVSVFKHNGKWVVT
INPDSVPRLKVNAEYAALGKGLGNSPDGQFIRTNLQEAKWLIKSLESRNETLLKVARCIV
EHQQDFFEYGEEAMKPMVLNDIALDVEMHESTISRVTTQKFMHTPRGIFELKYFFSSHVS
TDSGGECSSTAIRALVKKLVAAENQAKPLSDSKIATLLAEQGIQVARRTIAKYRESLGIA
PSNQRKRLL
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcatctcttcagctaaaaatgggccaacagcttgcaatgactcctcagttgcag
caagccattcgattattgcaattatcgacacttgacctgcagcaagagattcaagaagct
ctcgactctaaccctcttcttgatgtcgaagaagagcaattaagcacgcctgaaagttta
ctgtctcctgaacctacaccagaaaaagaaaccgccacagcagaacaagaaccctctgtc
actgacagcagtgatgtcattgatagcaataatatttctgaagaattagagatggatgct
agttgggatgatgtttacagtgcaaacagtggcagtactggattagcgattgatgatgac
accccattataccaaggtgaaaccaccgaaagtttgcaagattatttaatgtggcaagca
gaactaactccatttacggaagtcgatcgcgctatcgccaccaccattattgagtcatta
gatgaatatggttatctaaccattagtttagatgacgtactcgaaagcattggaaatgaa
gaagtcgagctcgatgaagttgaagccgttctcaaacgtattcaacattttgaccctctc
ggcgtcgcttctcgagatctcgctgaatgtttaatgatccaattagcgacctatccagta
gataccccttggctaccagaaactcaattaatcttaacaaagcatattaatttattaggt
aatcgtgactaccgacagttagcaaaagagactaagctaaaagagtacgatttaaaacaa
gtgatgatgcttatccatcaattggaccctcgcccaggcaaccgagtcatcgatactgat
actgagtatgttattcctgatgtttctgtctttaagcataatggaaaatgggtcgtcact
ataaacccagacagtgtccctcgcttaaaagtaaatgcagaatatgcggcattaggaaaa
ggcttaggcaacagtcctgatggacaatttattcgtacgaatttgcaagaagcaaaatgg
ttaattaaaagcttagagagcagaaacgagactctgctcaaagttgcacgctgtatagtt
gaacatcaacaagatttcttcgagtatggtgaagaagcgatgaaaccaatggtattgaat
gacatcgctttagacgttgaaatgcacgaatccaccatatcgcgcgtaacaacacaaaaa
ttcatgcatacccctcgtggtatttttgaattgaaatatttcttctctagtcatgttagt
acggacagcggcggtgaatgctcatcgacggcaatccgggcactagtgaaaaaattagtg
gcagcagagaatcaagccaagccactaagtgacagtaaaattgcgaccttactggctgaa
caaggcatacaagtggcacgacgaaccattgctaaatatcgtgaatcactgggtattgcc
ccatcaaatcagcgtaagcgtttactttaa
DBGET
integrated database retrieval system
