Aliivibrio salmonicida: VSAL_I0680
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Entry
VSAL_I0680 CDS
T00782
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V gamma chain
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
vsa
Aliivibrio salmonicida
Pathway
vsa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vsa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VSAL_I0680 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsa03400
]
VSAL_I0680 (recC)
Enzymes [BR:
vsa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VSAL_I0680 (recC)
DNA repair and recombination proteins [BR:
vsa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VSAL_I0680 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
CAQ78365
UniProt:
B6EGE9
LinkDB
All DBs
Position
1:757441..760824
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AA seq
1127 aa
AA seq
DB search
MFTVYHSNQLDVLKSLVVELIRLNPLDNPFEQEQILVQSPGMSQWLKIELAKELGIAANL
TFPLPATFIWDLFTQVLDDVPKRSAFNKEAMTWKIVTLLPELLKQDEFAPLQRYLENDDK
QLKCYQLAAKIADIFDQYLVFRPEWIQKWEAGEEVIELEGEHPWQPILWQALYDQTLALG
HSPYHRANMFEHFIETLENYLQTGTLPKGMPKRLFVVGITSLPPRYLDALAALGQHIDVH
LMFTNPCQHYWGDLRDNKYLAKLDRQNRIAKRLSSDLSTLENDDSDLFTNKSENSLLASW
GKLGRDNFQLLLDLEPNEYKIFVPTGREDLLHSIQSDILNLEERSRDDVLDNSEHKQPIS
PDDRSILLHSCHSPMREVEVLHDQLLDMFANDPELKPRDIIVMVADINVYSAAIQAVFGN
AAFDRYIPFAISDQSAEQENPVLLAFMNLMALPENRCGLSELLSLLEVPAVMSRFKFNAE
QFEIVKRWAEETGIRWGLDNSTSAHFDLPEHNQNSWLFGIQRMLLGYAMEQDAGLFEGMA
SYEQVQGMNAEIAGNLAHFIDQLLTYQITLGQAQKINAWRTIINQLMDDFLLVELEGELV
VKSIRDQLQKLEENLEDAGFDAPISAPIINNYLKNNLSGGKASQRFLAGKVNFCTLMPMR
SIPFDVICLLGMTDGSYPRTMPVEGFDLMQKRMKPGDRSRRDDDRYLFLEALQSANKAFY
LSYIGRSIRDNTEKAPSVLVSELLEYCQQSYCLDGDSELNPEESAKHLVKKLTIEHPLVP
YSQQSFVGDNTSYASEWLPTAKLEGQAAPEFQTEPLVFAPESKELELTELQRFWRLPVAY
FFNRGLKVFFETVESRVEDDEPFSIDGRTGYGMKSELLEELLAYDDPNQVFQLSREFYQQ
QKAQGKLPIGSFGEIAADKEVNTVKELVDHIQPLTTSPLEDQEVRLRFTFPHGEMELQGW
LKQRYKEGMLRYRGGKIRSHEVLATWIDHLCLCAMKQQQFTHLFGTDAIYHFEPIETEKA
YQHLEVILSLYISGNCAPLPYLPKAALAGLEAHIDKKGVWNDDDETHEKALKKMADEYSG
TRYAGENSNDYVMRMWPEWNDELGQTIFDNAKNVLHDALLHSEKEKL
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
gtgtttactgtttatcattcaaatcaacttgatgttcttaaatctcttgtcgttgaatta
attcgtctaaaccctcttgataacccatttgagcaagagcaaattctcgttcaaagtccg
ggtatgtcgcaatggcttaaaatcgaactcgccaaagagttaggcattgccgccaatctt
acctttccacttcctgctacttttatttgggacttgtttactcaggttctggatgacgtg
ccaaagcgcagtgcttttaataaagaagccatgacgtggaagatagtgacgttattacca
gagttattaaaacaagatgaatttgcgccactgcaacgctatttagaaaatgatgacaaa
caattgaagtgctaccaactcgctgcaaaaattgccgatatctttgaccaatatttagta
ttccgcccagaatggatccaaaaatgggaagcgggtgaagaggttatagaattagaaggc
gaacatccttggcagcctattttatggcaagccttgtatgaccaaaccttggcgctgggt
cattcaccttatcatcgtgccaatatgttcgagcattttattgaaaccctagaaaattat
ctgcaaacgggaaccttgccaaaaggcatgcctaagcgtttatttgtggtgggtatcact
tcattgcctcctcgttatttagatgcgctagcggctcttgggcaacatattgatgtgcat
ttaatgtttaccaacccatgtcaacattattggggtgatttacgtgataataaataccta
gcaaaattagatcgtcaaaatcgaatagctaaacgtttatcatcagatttatctacacta
gaaaatgatgatagtgatttatttacaaacaaatcagagaattctttattagcgtcatgg
ggtaagttaggtagggataactttcaattactgttagatttagaaccgaatgaatataaa
atttttgtgccaacaggaagggaagatcttctacattctatccaatctgatattttaaat
ttagaagaacgcagtcgtgatgatgtgcttgataacagtgagcacaagcaaccaatcagc
cctgatgaccgttcgattcttttgcattcatgtcatagcccaatgcgtgaagtagaagtt
ttacacgatcaattattggatatgtttgccaatgatccagaattaaaacctcgcgatatt
attgtgatggtagcagatatcaatgtgtacagtgcggcgatccaagccgtctttggtaac
gcagcattcgatcgctacattccttttgctatttccgatcaaagtgccgagcaagaaaac
ccagtgctattggcttttatgaatttgatggcgttgcctgaaaatcgttgtggtttgtca
gagctattaagtttgttggaagttcctgcggtcatgtcacgttttaaatttaatgccgag
cagtttgaaatagtaaaacgatgggcagaagaaaccggcattcgctggggattggataac
agcacctctgcgcattttgatcttcctgaacataatcaaaattcatggttatttggtatt
cagagaatgttgcttggttatgcgatggagcaagacgcgggcttatttgaaggcatggcg
agctacgaacaagtgcaaggcatgaatgccgaaatagcaggtaacttagcgcactttatt
gatcagcttttgacttatcagattaccctaggccaagcgcaaaaaattaatgcatggcgc
accattattaaccaactaatggacgattttttacttgttgaattagaaggtgaactggtc
gttaaaagcattcgagatcaattgcaaaaactggaagaaaatcttgaagacgccggattt
gatgcaccaatctctgcaccaattattaataattacctaaaaaacaatttatcaggagga
aaagcgagtcagcgtttcttagcggggaaagtaaatttctgtaccttaatgccaatgcgc
tcaattccatttgatgtgatctgtttacttggtatgacggatgggtcttatccgcgaacg
atgccggttgaaggtttcgatttaatgcagaaacgaatgaagccgggtgaccgttctcgt
cgagatgatgatagatatttatttttagaagcactgcaatcggcgaataaagcgttttat
ctcagctatataggtcgttctattcgagataatacagaaaaagccccttctgttttggtg
agtgaactgcttgaatattgtcagcaaagttattgtctagatggcgatagtgagctgaac
cctgaagagtctgctaaacacctagttaaaaaattaacaatagaacatccattagtccca
tatagccaacagagttttgtgggtgataacaccagttatgccagtgaatggttaccaacc
gcaaaactagaaggccaagccgcgccagaattccaaactgaacctttagtgtttgcacca
gaatcaaaagagcttgaattaaccgaactacaacgcttttggcgcttgcctgtcgcctat
ttctttaaccgtggtttaaaagtattttttgaaacggtagagagccgagttgaagatgat
gaaccgttttctattgatggtcgtactggttatggaatgaaatcagaattgctagaagag
ttattggcctatgatgatcctaaccaagtatttcaactaagtcgtgagttttatcagcaa
caaaaagcgcaaggaaaattaccgattggtagctttggtgagatcgcggcagacaaagaa
gtgaacacggtaaaagagttagtggatcatattcagccattaacgacatcaccattagag
gatcaagaagtgcgtttacgctttacttttcctcatggtgagatggaattacaaggctgg
ctaaagcagcgttataaagaaggaatgctgcgttatcgtggtggtaaaattcgttctcat
gaagtcttagcaacgtggattgatcatctgtgtttgtgtgccatgaagcaacagcaattt
actcacctctttgggaccgatgcgatatatcattttgagccaattgaaacagaaaaagcg
tatcaacatttagaagtgatattaagcctttatatttctggtaactgtgcgccattgcct
tatttaccaaaagccgcgttggccgggctagaagcacacattgataaaaaaggtgtgtgg
aatgacgatgatgaaacccatgaaaaagcactgaaaaaaatggctgatgaatacagtgga
actcgttacgcgggtgaaaacagcaatgattatgtcatgcgtatgtggcccgagtggaat
gacgaattaggtcagactatttttgataatgcgaaaaatgtattacatgatgccttgtta
cacagtgagaaagaaaaactgtaa
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