Aliivibrio salmonicida: VSAL_I0681
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Entry
VSAL_I0681 CDS
T00782
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vsa
Aliivibrio salmonicida
Pathway
vsa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vsa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VSAL_I0681 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsa03400
]
VSAL_I0681 (recB)
Enzymes [BR:
vsa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VSAL_I0681 (recB)
DNA repair and recombination proteins [BR:
vsa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VSAL_I0681 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_11
AAA_25
SLFN-g3_helicase
AAA_30
AAA_12
ResIII
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
CAQ78366
UniProt:
B6EGF0
LinkDB
All DBs
Position
1:761158..764784
Genome browser
AA seq
1208 aa
AA seq
DB search
MTTIAAPNQLNAMTFPLHGTRLIEASAGTGKTFTIASLYLRLLLGHGDENSRHSEELTVD
KILVVTFTEAATAELRERIRAKIHDARLAFARAVHKSDYKSGDPVIDPLLAAISDHKSAA
HILLNAERSMDEASIFTIHGFCQRMLTQNAFESGAQFESEFVTDQAKLMHQVAADFWRRS
FYHLPKMVAESVYDCWPSPSALLGDMGNSLTGVPKHLTVEPLEKSLEDFCQQGIARIDEL
KKQWSEHCVDFEALISGSGVDKRSYTKKNLPNWLDQVSIWASNPTTSLQIHDKLEKFSQS
LLIDKTKKGEAPEHAVFKLIDDFLAQPLEIKQPLLSLAIHKCRETLQQAKEQKNWLSFDD
LLTQLSAATKNQENALLLEKIREQYPIALIDEFQDTDPLQYSIFNTIYQDQSQCGLFMIG
DPKQAIYAFRGADIFTYIQARRQVADHYTLDTNWRSTADMVSSVNRIFEHGKQPFLYDDD
IPFYPVKYNPINAEQKSWSLDNQTQPAMTFWLQESKDGNPINKGNYQRVMAESTAAQIQT
ILTGSQQGSAHLQNGEKKEAIKAGNIAVLVRTGKEGKLVREALSKQGIASVYLSNRDSVF
SSPLAKDILRLLQAAMTPTDARAVRSALASSLFAYTADQLHQFNVDEMQWELAVNEFRTY
RKHWLQRGIMPMLHQIITQQGISERLLAENGGERHLTDLLHIGELLQQTSQTLDSDYGLL
RWLSDAISEPNGDAEEQTVRLESERNLVQIVTIHKSKGLEYDLVFLPFVCSYRAVDKKGE
VSFYDEDNRYSVLDLLKEDESVEKAEKERLAEDLRLIYVALTRAVYACYIGMAPIGKGTS
KKPPTGVHLSGLGYLIQQADECDIAELQACLEKLIAGNSPMVIQSPQTLSDVLYKETEDN
LFALTANKLSKPVKSNWWMTSYSGLVKQGNHHNDSSLELINLDVDSAEDKDDKELDLEPE
RTIFTFPRGARAGTFLHSLFEEVEFTQPINSEENTQIIIKLLEKENYDVEWLDVVQSMMQ
RVLDCPLDGHDLRLATKGPTQRLVEMEFLLPITLLNSSLVNKTIAKHDEVSARAGELGFS
TVSGMLKGFIDLVFEHEGKYYVLDWKSNHLGDSPECYGGDALIEAMRDHRYDFQYQLYAL
ALHRFLKSRIADYNYDTHFGGAYYIFLRGIEESHEGHDSNSNGVFYSKPSEVLLEELEQL
VNGETVDA
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgacgacaatcgcagctccaaatcaattgaatgcaatgacgtttcctttacatgggaca
cgtttaattgaagcttccgcaggtactggtaaaacctttaccattgccagtttatatcta
cgtttactattagggcatggtgatgagaacagtcgccatagtgaagaattaaccgtagat
aaaatactggtagtgacttttacggaagcggcaaccgcagaattaagagaacgtattcga
gctaagatccatgatgctcgtttagcgtttgctcgtgctgtgcataaaagtgattataag
agtggcgatcccgttattgacccgttattagcggctatttctgatcataagtcggcagca
cacatattattgaatgctgaacgcagtatggatgaagcctcaatctttaccattcatggc
ttttgccagcgcatgctaacccaaaatgcctttgaatctggtgcccagttcgaaagtgaa
tttgtcaccgaccaagccaaattaatgcaccaagtggccgcagatttttggcgtcgtagt
ttttatcatctgccaaaaatggtggctgaaagtgtttacgattgctggccaagcccttct
gcattattaggtgatatgggcaatagtcttactggtgtcccaaagcatttaacggttgag
ccattagagaagtcattagaagatttctgtcagcaaggcattgctcgtattgatgaatta
aaaaaacagtggtcagaacattgtgtagattttgaagcgctaatttcaggttcaggtgtt
gataaacgcagttacactaaaaagaatttaccaaattggttggatcaagtgtcaatatgg
gcaagtaatccaacgacttcgctgcaaattcatgacaaattagaaaagttttctcaatcg
ttattaattgataaaaccaaaaaaggcgaagcaccagaacacgcagtatttaaattaatt
gatgactttttagcgcaaccattagaaataaaacagccgttgttgtcattagccattcat
aagtgccgagaaaccttacagcaagcaaaagagcagaagaactggttatcgtttgatgac
ttgctgactcaattgtcggctgcaaccaaaaatcaagagaacgctttactgctagaaaag
atccgcgagcaatacccaattgccttgattgatgaattccaagataccgatccacttcaa
tattctatttttaataccatctatcaagatcaatcacagtgtggtttgttcatgattggc
gatccaaagcaggctatttatgctttccgtggcgcagatatatttacttatattcaggct
cgtcgccaagtggcggatcactacactcttgatactaactggcgatcaactgccgatatg
gtgtcgtcagtaaaccgtatttttgagcatggtaaacaaccgtttttatacgatgatgat
attccgttttatccggtgaaatataatccgattaatgcggaacaaaaatcgtggtcgtta
gataatcaaactcagcctgcaatgacgttttggttacaagaaagcaaagatggtaacccg
ataaacaaaggcaattaccaacgagtaatggcggaatcgacggcggcgcaaattcaaacc
attttgaccggatctcaacaagggtctgcgcacctgcaaaatggagagaaaaaagaagcg
attaaagccgggaatattgccgtactggttcgtactggtaaagaagggaaattggttcgt
gaagccttatcaaagcaaggtattgcgagtgtttatttatctaaccgagacagtgtgttt
tcttctcctttagctaaagacattttacgtttattgcaggctgcaatgacgccaacggat
gcacgagcggttcgttctgcattagcctcgtctttgtttgcttatacggccgatcaacta
catcaatttaatgtcgatgaaatgcagtgggaattagccgttaatgagttccgcacctac
cgtaagcattggttacaacgtggcatcatgcctatgttgcatcaaattattactcaacaa
ggtatttcagagcgtttattagctgaaaatggcggcgaacgtcatttaactgatttactt
catattggtgaattattacaacaaacaagccaaaccctcgacagtgattatggattgttg
cgttggttatctgatgcgatttctgaacctaatggtgatgctgaagagcaaacggtacgt
ttagaatctgagcgtaatttggtgcagatcgtgacgattcataaatcaaaagggttggaa
tacgatctcgtctttttgccttttgtttgctcctatcgagccgtggataaaaaaggcgaa
gttagcttttatgatgaagacaatcgttattctgtcttagatttattaaaggaagatgag
tcggtcgaaaaagccgagaaagaacgcttagcagaagatttacgcttaatttatgttgcg
ctaactcgtgctgtttacgcttgttatattggcatggcacctatcggtaaaggcacatcg
aaaaaaccaccaacgggtgtacacctttctggtttagggtatttaatccaacaagcggat
gaatgtgatattgctgagcttcaagcgtgccttgaaaaattaatagcaggcaattcgcct
atggtgatccagtcacctcaaaccttaagtgatgtgctttataaagagacagaagacaac
ttattcgcattaacagccaacaaattgagtaagcctgtgaaaagtaattggtggatgacc
agttattcgggtttggtgaaacaaggtaaccatcataacgattcgtcattagaattgatt
aatttggatgtggattccgctgaagataaagacgacaaagagttagatttagagccagag
cgaacgatatttactttccctcgtggtgcgagagcgggtacgtttttacactcattgttt
gaagaggttgaatttactcaaccaattaacagcgaagaaaatacacaaataatcatcaag
ctattagaaaaagaaaactacgatgtggaatggttagacgtcgttcaaagcatgatgcaa
cgcgtgctcgattgtccgttggatggtcacgatttacgattggcaaccaaaggcccaact
caacgtttggttgaaatggagtttttattgccgataacgctattgaactcaagcttggtc
aataaaaccatcgctaaacacgatgaagtctctgcacgtgcgggtgagttaggcttttct
accgtgagtggaatgttgaaaggctttatcgatttagtgtttgagcatgaaggcaaatat
tacgttctcgattggaaatctaaccatttaggcgattctccagaatgctacggcggtgac
gctttaattgaagcaatgcgagatcatcgttatgacttccaatatcagctgtatgcttta
gcgttgcatcgattcttgaaaagtcgtattgccgattataattacgacactcattttggt
ggagcgtattatattttcttgcgtggtattgaagagagtcatgaggggcatgatagcaat
tcaaatggggtcttttattcaaaaccaagtgaagtgttattagaagaattagagcaattg
gtaaatggagaaacagtcgatgcttaa
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