KEGG   Aliivibrio salmonicida: VSAL_I0988
Entry
VSAL_I0988        CDS       T00782                                 
Symbol
holA
Name
(GenBank) DNA polymerase III, delta subunit
  KO
K02340  DNA polymerase III subunit delta [EC:2.7.7.7]
Organism
vsa  Aliivibrio salmonicida
Pathway
vsa03030  DNA replication
vsa03430  Mismatch repair
vsa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vsa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VSAL_I0988 (holA)
   03430 Mismatch repair
    VSAL_I0988 (holA)
   03440 Homologous recombination
    VSAL_I0988 (holA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vsa03032]
    VSAL_I0988 (holA)
   03400 DNA repair and recombination proteins [BR:vsa03400]
    VSAL_I0988 (holA)
Enzymes [BR:vsa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     VSAL_I0988 (holA)
DNA replication proteins [BR:vsa03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     VSAL_I0988 (holA)
DNA repair and recombination proteins [BR:vsa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     VSAL_I0988 (holA)
SSDB
Motif
Pfam: DNA_pol3_delt_C DNA_pol3_delta DNA_pol3_delta_C
Other DBs
NCBI-ProteinID: CAQ78673
UniProt: B6EIN0
LinkDB
Position
1:complement(1090734..1091771)
AA seq 345 aa
MRVFPEQLVQNLERGLRQNYLLFGNEPLLKQECLDQIRKHSFQQGFEEKHQFTLDKQLDW
NLIFDCTQALSLFSSRQIIELTVSDTGLTAAHTSKIKELVPMLHDDILLIFQGPRVNKSQ
ESTQWFKALTQQGLFIPCNTPDNQQLPRFIQQRCKLLKLKPDAEAVQMLAQWHEGNLLAL
AQSLDKLSLLYPDGLLTLIRIEEALNRNNHFTPFQLMDALLFGQAKRAQRILRQLEGESV
EVVILLRTIQKEVFLLLSFQQAISQGEAMFTVFDRYKVWQNRRSLYQAALQRLSMTQIQA
LIKSLAQLEVAVKTDFDTNCWPQLSQLSLDICNIHISVTPPPSHS
NT seq 1038 nt   +upstreamnt  +downstreamnt
atgcgagtattccctgaacagctagtacaaaacttagaacgtggtttacgtcaaaattac
ctattatttggtaatgagccacttctaaaacaagaatgcctcgatcaaatccgtaagcac
agttttcaacagggttttgaagaaaagcatcaatttacgttagacaaacaattggactgg
aacctgatcttcgattgcactcaagcattaagtctattttcatcaagacaaattatcgaa
ttaaccgtttcagatacaggtttaactgcggctcacaccagtaaaataaaagaactcgtc
cctatgttacacgacgatattttgttgatatttcaaggcccaagagtcaataaaagccaa
gaaagtacccaatggtttaaagcattaacacaacaagggttatttattccttgtaacacc
cctgataaccaacaattacctcgttttattcaacaacgttgtaaattattaaaattaaaa
cctgacgcagaagcagtacaaatgctagcgcaatggcatgaaggtaacctacttgcactt
gctcaaagtttagacaaactgtctttattataccccgatgggttactgactcttattaga
atagaagaagcgttaaaccgtaataatcacttcactcctttccagttaatggatgcttta
ttatttggtcaagcaaagcgtgcacaacgaatccttcgtcaattagaaggtgaaagtgtt
gaagttgtgattctcttacgtacgatccaaaaagaagtgttcttattgctctcatttcaa
caagcaatcagccaaggtgaagcaatgtttactgtttttgatcgttataaggtatggcaa
aaccgtcgttcattgtatcaagcagcattgcaacgcttatcaatgacacaaattcaagca
ttaataaaatcattagctcagcttgaagttgccgttaaaaccgattttgataccaactgt
tggccacaacttagccagttaagcttagatatctgtaatattcacatttcagtgacacct
ccaccatctcattcatag

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