Entry |
|
Symbol |
holA
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Name |
(GenBank) DNA polymerase III, delta subunit
|
KO |
|
Organism |
vsa Aliivibrio salmonicida
|
Pathway |
|
Brite |
KEGG Orthology (KO) [BR:vsa00001]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VSAL_I0988 (holA)
03430 Mismatch repair
VSAL_I0988 (holA)
03440 Homologous recombination
VSAL_I0988 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:vsa03032]
VSAL_I0988 (holA)
03400 DNA repair and recombination proteins [BR:vsa03400]
VSAL_I0988 (holA)
Enzymes [BR:vsa01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VSAL_I0988 (holA)
DNA replication proteins [BR:vsa03032]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VSAL_I0988 (holA)
DNA repair and recombination proteins [BR:vsa03400]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VSAL_I0988 (holA)
|
SSDB |
|
Motif |
|
Other DBs |
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LinkDB |
|
Position |
1:complement(1090734..1091771)
|
AA seq |
345 aa
MRVFPEQLVQNLERGLRQNYLLFGNEPLLKQECLDQIRKHSFQQGFEEKHQFTLDKQLDW
NLIFDCTQALSLFSSRQIIELTVSDTGLTAAHTSKIKELVPMLHDDILLIFQGPRVNKSQ
ESTQWFKALTQQGLFIPCNTPDNQQLPRFIQQRCKLLKLKPDAEAVQMLAQWHEGNLLAL
AQSLDKLSLLYPDGLLTLIRIEEALNRNNHFTPFQLMDALLFGQAKRAQRILRQLEGESV
EVVILLRTIQKEVFLLLSFQQAISQGEAMFTVFDRYKVWQNRRSLYQAALQRLSMTQIQA
LIKSLAQLEVAVKTDFDTNCWPQLSQLSLDICNIHISVTPPPSHS |
NT seq |
1038 nt +upstreamnt +downstreamnt
atgcgagtattccctgaacagctagtacaaaacttagaacgtggtttacgtcaaaattac
ctattatttggtaatgagccacttctaaaacaagaatgcctcgatcaaatccgtaagcac
agttttcaacagggttttgaagaaaagcatcaatttacgttagacaaacaattggactgg
aacctgatcttcgattgcactcaagcattaagtctattttcatcaagacaaattatcgaa
ttaaccgtttcagatacaggtttaactgcggctcacaccagtaaaataaaagaactcgtc
cctatgttacacgacgatattttgttgatatttcaaggcccaagagtcaataaaagccaa
gaaagtacccaatggtttaaagcattaacacaacaagggttatttattccttgtaacacc
cctgataaccaacaattacctcgttttattcaacaacgttgtaaattattaaaattaaaa
cctgacgcagaagcagtacaaatgctagcgcaatggcatgaaggtaacctacttgcactt
gctcaaagtttagacaaactgtctttattataccccgatgggttactgactcttattaga
atagaagaagcgttaaaccgtaataatcacttcactcctttccagttaatggatgcttta
ttatttggtcaagcaaagcgtgcacaacgaatccttcgtcaattagaaggtgaaagtgtt
gaagttgtgattctcttacgtacgatccaaaaagaagtgttcttattgctctcatttcaa
caagcaatcagccaaggtgaagcaatgtttactgtttttgatcgttataaggtatggcaa
aaccgtcgttcattgtatcaagcagcattgcaacgcttatcaatgacacaaattcaagca
ttaataaaatcattagctcagcttgaagttgccgttaaaaccgattttgataccaactgt
tggccacaacttagccagttaagcttagatatctgtaatattcacatttcagtgacacct
ccaccatctcattcatag |