Aliivibrio salmonicida: VSAL_I1064
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Entry
VSAL_I1064 CDS
T00782
Symbol
rnd
Name
(GenBank) ribonuclease D (rnase d)
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vsa
Aliivibrio salmonicida
Brite
KEGG Orthology (KO) [BR:
vsa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vsa03016
]
VSAL_I1064 (rnd)
Enzymes [BR:
vsa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
VSAL_I1064 (rnd)
Transfer RNA biogenesis [BR:
vsa03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VSAL_I1064 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
CAQ78749
UniProt:
B6EIV5
LinkDB
All DBs
Position
1:1156366..1157490
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AA seq
374 aa
AA seq
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MEFEIVKHSQRLAEICQQASNKPFLMLDTEFVRTRTLYARLGLIQMFDGETLALVDPVEI
DDLTPLWDLLKNESVTKVLHACGEDLEVFQHYAGCMPTPMIDTQIMAAFLGYGLSTGFAK
LVSDYLGVDLDKGESRTDWMARPLSDKQLDYAAADVHYLLPLFEKLQAELAQTEWEKAAY
QESLLAVKKREKQPDPEKAYLDIKNAWQLNGKQLAILKMAAQWRLEEARKRDLAVNFVVQ
ELNLWKLARFGLRSKEQMLKEEFDSREVQRHGGKLLRFTYLADELNENEYPETLTRLMDY
PGYKQIFKLLKDEVKAASDQSGLMPEFLASKKQLNQLLSWKWKKNSHPDLKPDVLKEWRE
GLLAERFMAVLDKS
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
gtggaatttgaaatcgttaaacacagccaacgtttagctgaaatttgccaacaggcaagt
aataaaccttttttaatgctggatactgagttcgtacgtacgagaactttgtatgcacgt
ttaggtttaattcaaatgtttgatggtgaaacattagcattagttgatcctgttgaaatt
gatgatttaacgccgctttgggatttattaaaaaacgaaagtgtgacaaaagttcttcat
gcttgtggtgaagatttagaagtatttcaacattatgctggctgtatgccgacaccaatg
attgatactcaaattatggcggcatttttaggctatggtttgtcgacaggctttgcgaaa
ttagtgtctgattatttaggtgttgatctcgataaaggtgaatctcgtactgattggatg
gcgcgtcctttatcagataaacaattggattatgccgcagccgatgtgcattatttatta
ccattgtttgagaaactacaagcagaattagctcaaacagagtgggaaaaagcagcgtat
caagaatcgttacttgcggttaaaaaacgtgaaaaacaacctgatcctgagaaagcgtat
ttagatattaaaaatgcttggcagttaaatggtaagcagttagctattttaaaaatggca
gcacaatggcgattagaagaagcaagaaagcgcgatttggcggttaactttgttgtacaa
gaattaaacttatggaaattagctcgatttggacttcgcagtaaagagcaaatgctaaaa
gaagagtttgattcgagagaggttcaacgtcatggtggaaaactattgcgtttcacatac
cttgcagatgagctaaatgaaaacgaatatccagaaacgttaacacgattaatggattat
ccgggctataagcaaatttttaagttgttaaaagatgaagtaaaagcggcctctgatcaa
tcgggtttgatgcctgagtttttagcgtctaaaaaacagcttaatcaattattgtcttgg
aaatggaagaaaaacagtcaccctgatttaaaaccagacgtattaaaagagtggagagaa
gggctgcttgctgagcgctttatggcggtgttagataaaagctaa
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