Aliivibrio salmonicida: VSAL_I1312
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Entry
VSAL_I1312 CDS
T00782
Name
(GenBank) putative helicase (DEAD/DEAH box helicase)
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vsa
Aliivibrio salmonicida
Pathway
vsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VSAL_I1312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsa03019
]
VSAL_I1312
Enzymes [BR:
vsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VSAL_I1312
Messenger RNA biogenesis [BR:
vsa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VSAL_I1312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
AAA_19
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
CAQ78997
UniProt:
B6EKB3
LinkDB
All DBs
Position
1:1423587..1424891
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AA seq
434 aa
AA seq
DB search
MSFSSQGLAPEVVKALTECGYQKLTPIQQKAIPLARKGHDILANAQTGTGKTAAFALPVI
QRLLDTKKSATRRSARALILAPTRELAEQIAVNIISYTKYTSLKVTAVFGGKKMSSQERA
LDPGVDILVATPGRLQEHIEEGNVSIANLEFLVFDEADRMLDMGFVNAIRNIMMEVNSAP
QIMLFSATSSAQMNKLASDILRKPKRISVDRENMTATTISHVVYPVDEERKTELLSELIG
RKNWQQVLVFVNYKETANNIVKELKLDGIKAVICHGDKAQSARRRALEEFKEGKARVMVA
TDVAARGLDIADLPHVINYDMPFLAEDYVHRIGRTGRAGKKGHAISFVSREEELTVVQVE
TLIQQRIHRVEQPGYEPKSRESYIEKVNTKAGFKDRKGRTNNATNANQDQSSAERRMRLK
NAIQKKAGITKLKK
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttcatctcaaggtcttgcacctgaagtcgtaaaagcattaactgaatgtggt
tatcaaaaattaaccccaattcagcagaaagctattcctttggcgcgtaaaggtcatgat
attctggctaatgcacaaacgggtacaggtaaaactgctgcgtttgcattgcctgtaatt
caacgattattagataccaaaaaatcggcgactcgtcgttcagctcgtgcgttaattctg
gctccaactcgtgagcttgcagagcaaattgcagtaaatattattagctacacgaaatac
acgtcattaaaagtgacggctgtatttggtggcaaaaagatgtcttctcaagaacgagcg
cttgatccaggtgttgatatcttagtagcgacacctggtcgtcttcaagaacatatagaa
gaaggcaatgtatcaatcgctaaccttgaatttttagtattcgatgaagctgaccgtatg
ttagacatgggctttgttaacgcaatccgtaatatcatgatggaagttaattcagcgccg
caaattatgttgttctctgcgacgtcttcagcgcaaatgaataagttagcgagtgatatt
ttacgtaaaccaaaacgtatttcagttgaccgtgaaaacatgacggcaacaacaatatca
cacgttgtttatccggtagatgaagaacgtaaaactgaattactatcagaattaattggt
cgtaaaaactggcaacaagtattggtttttgttaactataaagaaaccgcaaacaacatc
gttaaagagcttaagcttgatggtattaaagcggtgatttgtcatggtgataaagcacaa
agtgctcgtcgtcgtgctctagaagagtttaaagaaggcaaagctcgtgtcatggttgca
acggatgttgctgctcgtggtcttgatattgctgacttaccacacgtaattaactacgat
atgcctttcttggctgaagattacgttcaccgtattggtcgtacaggccgtgctggtaaa
aaaggtcatgcgatttcttttgttagccgtgaagaagagttaacggttgttcaagtggaa
acacttatccaacaacgaattcaccgtgttgagcaacctggctatgaaccaaaaagccgt
gaatcttacattgaaaaagtgaatacgaaagcaggatttaaagatcgtaaaggtcgtaca
aataatgcgactaatgcgaaccaagatcagtcatctgctgaacgtcgtatgcgtctaaaa
aatgcaatccagaagaaagctggcattactaagctaaaaaagtaa
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