Aliivibrio salmonicida: VSAL_I2222
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Entry
VSAL_I2222 CDS
T00782
Symbol
ihfB
Name
(GenBank) integration host factor beta-subunit
KO
K05788
integration host factor subunit beta
Organism
vsa
Aliivibrio salmonicida
Brite
KEGG Orthology (KO) [BR:
vsa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vsa03032
]
VSAL_I2222 (ihfB)
03036 Chromosome and associated proteins [BR:
vsa03036
]
VSAL_I2222 (ihfB)
03400 DNA repair and recombination proteins [BR:
vsa03400
]
VSAL_I2222 (ihfB)
DNA replication proteins [BR:
vsa03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
VSAL_I2222 (ihfB)
Chromosome and associated proteins [BR:
vsa03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
VSAL_I2222 (ihfB)
DNA repair and recombination proteins [BR:
vsa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
VSAL_I2222 (ihfB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
Cac1_C
HU-CCDC81_euk_2
HU-CCDC81_euk_1
DUF348
Motif
Other DBs
NCBI-ProteinID:
CAQ79906
UniProt:
B6EIY1
LinkDB
All DBs
Position
1:2389129..2389410
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AA seq
93 aa
AA seq
DB search
MTKSELIEQLCSKKPQLSAKQVEDTVKEVLEQMATTLEGGDRIEIRGFGSFSLHYREPRL
GRNPKTGDKVELDGKFVPHFKPGKELRERVNFS
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatctgaattgattgaacaactgtgtagtaaaaagcctcaactttctgctaag
caggttgaagatacagtcaaggaagtccttgaacagatggcaacaacgctagagggcggt
gatcgtatagagattcgtggttttggtagtttttctctacactatcgggagcctcgttta
ggtcgtaatccaaaaactggcgacaaagtggaattagacggtaagtttgttcctcatttt
aaaccaggtaaagaactgcgtgaacgtgtgaatttcagctga
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