KEGG   Aliivibrio salmonicida: VSAL_I2412
Entry
VSAL_I2412        CDS       T00782                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha chain
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
vsa  Aliivibrio salmonicida
Pathway
vsa03030  DNA replication
vsa03430  Mismatch repair
vsa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:vsa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VSAL_I2412 (dnaE)
   03430 Mismatch repair
    VSAL_I2412 (dnaE)
   03440 Homologous recombination
    VSAL_I2412 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vsa03032]
    VSAL_I2412 (dnaE)
   03400 DNA repair and recombination proteins [BR:vsa03400]
    VSAL_I2412 (dnaE)
Enzymes [BR:vsa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     VSAL_I2412 (dnaE)
DNA replication proteins [BR:vsa03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     VSAL_I2412 (dnaE)
DNA repair and recombination proteins [BR:vsa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     VSAL_I2412 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 DNA_pol_IIIA_C tRNA_anti-codon tRNA_anti_2
Other DBs
NCBI-ProteinID: CAQ80096
UniProt: B6EJW5
LinkDB
Position
1:complement(2579669..2583148)
AA seq 1159 aa
MSETKFVHLRVHSDFSLIDGLSKVPPLVKKMAELNMPAMGLTDFTNLCGLVKYYFAAHGA
GIKPIIGADFKVQSTEFGNELFNLTVLAKNNEGYKNLTLLISKAYLRGHVQHTPVMDKEW
LIEHKEGLIILSGAKNGDVGKALLKGNQELVNECVDFYKTYFPDHYYLELIRTGRVDEDS
YLHFAVDLAEKEGLPVVATNDVCFIKADDFDAHEIRVAIHDGFTLEDPRRPKNYSSQQYL
RTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPNFPTEGMKIEDFLVKKSQEGL
ERRLAFLFPDEKVRLERRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNLIPVGP
GRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDKRDKVIEHVAE
IYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRLSKLIPTDPGMTLAKAFEAEPQ
LPELYNADEEVRALIDMCRILEGCTRNAGKHAGGVVISPTTITDFSPLYCDADGNFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRREKEGKEAVRIESIPLDDQASFKLL
QNSETTAVFQLESRGMKDLIKRLQPDSFEDIIALVALFRPGPLQSGMVDNFIDRKHGREE
VSYPDVNWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPEEM
AKQRGTFKDGAIANGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTDKIIGLVDECFRMKLKVLPPDVNAGLYRFNVDEDGAIVYGIGAIKG
VGEGPIENIIEARNKGGYFRDLFDFCSRIDTKKTNKRIVEKLIRSGALDRLGPHRAALMA
SVEDAMKAAGQHHQAESFGQSDMFGVLTQAPEEVEQAYTHVPRWPEKVWLEGERETLGLY
LTGHPVNAYIKELSRYTTWRLNDAHVTRRDQTVTVAGLVIAARVMTTKRGSRIGLMTLDD
RSGRMEVMLFSDALDRYADLLETDKIVLVSGQVSFDDFNGGLKMSAREVMSLGDAREKYA
RGLSVSVTDAQINNQFFERFSQILEPNRAGTVPVNVYYQRADARVKLVLGTEWRVTPTDQ
LIDDLKSLLGEQQVELEFN
NT seq 3480 nt   +upstreamnt  +downstreamnt
atgtctgaaaccaaattcgtacaccttagggtacacagtgatttctccttaattgatggg
ctttcaaaggttccaccattagttaaaaagatggctgagttaaatatgccagcgatgggg
ttgactgactttaccaacttgtgtggtttggttaaatactattttgcagcacatggtgca
ggtattaaaccgattattggtgctgactttaaagttcaatcaacagagtttggtaatgaa
ctgtttaatttgaccgttttggcaaaaaataatgaaggttataaaaacctgactttattg
atatcaaaagcttatttgcgtggccatgttcaacatacccctgttatggataaagagtgg
ttaattgaacataaagaaggattaattatcctttctggtgcgaaaaatggggatgtaggt
aaagccttattaaaaggtaatcaagaattagttaatgaatgtgtcgatttttacaaaacg
tattttcctgatcattattatttagaattgatccggacagggcgtgttgacgaagacagc
tatcttcattttgctgttgatcttgctgaaaaagaagggttgccagttgtagcaacaaat
gatgtttgttttatcaaagccgatgattttgatgctcatgagatccgtgtcgcgattcat
gatggctttactttagaagatcctcgtcgacctaaaaactacagttcacaacagtatttg
agaacggaagaggagatgtgtgagctttttgctgacatcccagaagcgttagaaaacagt
gttgagatagccaagcgttgtaatgttaccgttcgtttaggtgaatactttctgcctaac
ttcccaacggaaggaatgaagattgaagatttcctcgtcaagaaatctcaagaaggatta
gaaagacgtttagcctttttgttcccagatgaaaaagtacgtttagagcgtcgaccagaa
tacgatgaacgtctgcaaatagaactcgatgtaattaaccaaatgggattccctggttat
ttcttgatcgtaatggagtttatccagtggtcaaaagataacttaattccagttggacct
gggcgagggtcaggtgctggttcacttgttgcctatgcgttagatattaccgatctcgat
ccacttgaatatgacctgttattcgaacgattcttgaaccctgagcgtgtctcgatgccc
gatttcgatatcgacttctgtatggataagcgtgataaggttattgagcacgttgctgaa
atatatggtcgtgatgcggtatcccaaattattacctttggtacgatggcggctaaagcg
gtaattcgagatgttggtcgagtgcttggtcatccttatggttttgttgatcgtctttca
aagttaataccgacagatcctggtatgacgttagcgaaagcttttgaagcagaaccacaa
ctgcctgaactgtataatgcagatgaagaagttcgtgctcttatcgatatgtgtagaatc
ttagaaggttgtacacgaaatgcaggtaagcatgcgggtggtgttgttatttcaccaacg
acgattacggatttctcaccattgtattgtgatgcggatggtaatttccctgttacacag
tttgataagaatgatgttgaaaccgcaggtttagttaaattcgacttcttaggcctacga
accttaacgatcattgattgggcgttgggtttaattaaccctcgacgagaaaaagaagga
aaagaagcggttcgaatcgaatcgatccctcttgacgatcaagcgtcctttaagttgtta
caaaattcagaaacgaccgcggtattccagttagaatctcgtggaatgaaagatctgatc
aagcgattacagcccgatagctttgaagatatcatcgctttggtggcacttttccgtcct
ggtcctttgcaatcagggatggtagataactttattgaccgtaaacatggtcgtgaagag
gtgtcttatcctgatgtaaattggcagcatgagtcattaaaagaaacgctagaaccaacg
tacggcattattttataccaagaacaagtaatgcaaattgcacagatcttagcgggttat
acgctaggtggcgccgatatgcttcgtcgtgctatgggtaagaaaaaacccgaagaaatg
gcaaaacagcgtggtacgtttaaagacggtgcgattgcgaatggcgtagatggcgagttg
tcgatgaaaatcttcgacttggtagaaaagtttgccggttatggttttaacaaatcgcac
tcagcggcctatgctctggtttcttatcaaacattatggttaaaaacgcactatccagcc
gaattcatggcagcggtaatgacggccgatatggataatacggacaaaatcatcggctta
gttgatgaatgttttcgtatgaaactgaaagtattaccgccagatgtaaatgcgggcctt
tatcgttttaatgttgatgaagatggcgccattgtttacggtattggtgcgattaaaggg
gttggtgaaggccctattgaaaatattatcgaagcacgaaataaaggtggttatttccgt
gatttattcgatttttgttctcgaattgacacgaaaaaaaccaataaacgtattgtggaa
aaattaattcgttctggtgctttggatcgccttggtcctcatagagccgcattaatggca
tcggtagaagatgcaatgaaggcggcaggtcaacaccatcaagcagaatcgtttgggcaa
tcagacatgtttggggtattaactcaagcaccagaagaagtcgaacaagcttatacgcat
gttccgcgatggccagagaaagtatggcttgaaggggagcgggaaaccttaggtctttat
ctaacggggcaccccgttaatgcgtacattaaagaattgtctcgatatacaacgtggcgt
ttgaatgatgctcacgttacgagacgcgatcaaactgtaacggttgcaggtttagttatt
gctgctagagtaatgaccaccaaacgaggcagtcgtattggtttaatgacattagatgac
cgatctggccgaatggaagtgatgttgttctctgatgcccttgatcgatacgctgatttg
ctagaaactgacaaaatagtgcttgtttctggacaggtcagctttgatgatttcaatggg
gggcttaaaatgtctgcccgtgaagtgatgtcattgggagatgcacgagaaaaatacgct
cgtggattgtccgtttctgttaccgatgcgcaaattaacaaccaattttttgaacgcttt
agtcaaatactagagcctaatcgggcagggactgtcccggtaaacgtatattatcagcga
gccgatgctcgtgttaagttggtcctagggacggagtggcgagttacgccaacagaccaa
ctaatagatgatttgaagtcgttgcttggcgaacagcaagtcgagcttgaatttaactag

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