Aliivibrio salmonicida: VSAL_II0142
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Entry
VSAL_II0142 CDS
T00782
Symbol
rhlE
Name
(GenBank) putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vsa
Aliivibrio salmonicida
Pathway
vsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VSAL_II0142 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsa03019
]
VSAL_II0142 (rhlE)
Enzymes [BR:
vsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VSAL_II0142 (rhlE)
Messenger RNA biogenesis [BR:
vsa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VSAL_II0142 (rhlE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_19
HI1480
ERCC3_RAD25_C
HEM4
CMS1
DsrH
Motif
Other DBs
NCBI-ProteinID:
CAQ80896
UniProt:
B6EQC4
LinkDB
All DBs
Position
2:163541..165028
Genome browser
AA seq
495 aa
AA seq
DB search
MGFTSLGLSAPILKAVEAQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLL
ERLSKGQKLKFNQVRALILTPTRELAAQVHESVEKYSVNLPLTSDVVFGGVKANPQMQRL
RKGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRMLDMGFIHDIKKILNKLPKNRQ
NLLFSATFSDEIRQLAKGLVNNPVEISVATRNTTAETVEQSVYVVDKTKKARVLTKLIKD
NDWKQVLVFSKTKHGANRLAKTLEEKGISSAAIHGNKSQGARTKALANFKSGQVRVLVAT
DIAARGLDIEQLPQVINVDLPKVPEDYVHRIGRTGRAGATGKAISFVSEDEASELFAIER
LIQKILPRHTLEGFEPEMKVPESRLDSRPIKAKKPKKTHAPRVEHKDGQRSGENRSGHKQ
GAKPAPRRNTENKDGAAKKEGGNAKKRPTDGGKPRSKGNGENRGNGSNFGSGKPKSDATK
PRRQGPRPARKPVAQ
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgggttttacctctctgggcttatctgcccctattttaaaagctgtagaagctcaaggt
tacagcacgccttcaccaatccaattacaagcgattccagcggtaattgaagggaaggac
gttatggcggcggctcaaacaggaacaggtaaaacagcaggctttacacttcctcttctt
gagcgtttatcaaaaggtcaaaaacttaagtttaaccaagttcgtgcattaatcttaaca
ccaactcgtgagcttgcagcgcaagtgcatgaaagtgttgaaaaatacagtgtgaatctt
ccactaacttctgatgtcgtatttggtggcgttaaagcaaacccacaaatgcaacgcctt
cgtaaaggtgttgatgtattggttgcaacccctggccgtttgttggatcttgcgaatcaa
aatgcaattaaattcgatcaactggaaattctagttttggatgaagctgaccgtatgtta
gatatgggctttattcacgacattaaaaagatcttaaataaattacctaagaaccgtcaa
aatctacttttctctgcgacgttctctgatgagatccgtcagttagcaaaagggcttgta
aataaccccgttgagatttcagtagcaacgcgtaacacaacggcagaaacggttgaacaa
tcagtttacgttgttgataaaacgaaaaaagcgcgtgttcttactaagctaattaaagac
aatgactggaaacaagtattggttttcagcaaaactaaacatggtgcaaaccgtttagcg
aagactcttgaagagaaaggcattagctctgcggctatccatggcaataagagccaaggt
gcacgtacgaaagcattagctaacttcaagagcggtcaagttcgtgtattagtagcgaca
gacattgctgctcgtggtttggatatcgagcaattaccacaagttatcaacgttgactta
ccaaaagtgcctgaagattacgttcaccgtattggccgtactggtcgtgctggcgcaacg
ggtaaagcaatctcttttgtgagtgaagatgaagcaagtgaattgttcgcgattgagcgt
ctaattcaaaaaatcttacctcgtcatacattagaaggttttgaacctgaaatgaaagtg
cctgagtcaagattagattctcgtcctatcaaagcaaagaaaccaaagaaaacacatgca
ccacgtgtagagcataaagatggtcaacgttcaggtgaaaaccgcagtggtcataagcaa
ggcgcgaaaccggctccaagacgtaacactgagaataaagacggtgctgctaagaaagaa
ggcggtaatgctaagaaacgtcctactgatggtggtaaacctagatcgaaaggcaatggt
gaaaaccgcggtaatggcagtaactttggtagtggtaaaccaaaatcagatgcgacaaaa
ccacgtcgccaaggcccacgtccagcgcgtaagccagtagctcaataa
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