Aliivibrio salmonicida: VSAL_II0222
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Entry
VSAL_II0222 CDS
T00782
Name
(GenBank) exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
vsa
Aliivibrio salmonicida
Pathway
vsa03030
DNA replication
vsa03430
Mismatch repair
vsa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vsa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VSAL_II0222
03430 Mismatch repair
VSAL_II0222
03440 Homologous recombination
VSAL_II0222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vsa03032
]
VSAL_II0222
03400 DNA repair and recombination proteins [BR:
vsa03400
]
VSAL_II0222
Enzymes [BR:
vsa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VSAL_II0222
DNA replication proteins [BR:
vsa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VSAL_II0222
DNA repair and recombination proteins [BR:
vsa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VSAL_II0222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
CAQ80976
UniProt:
B6EQK1
LinkDB
All DBs
Position
2:246909..247592
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AA seq
227 aa
AA seq
DB search
MVSLPTNYMTWKYFVPLSSSKNPAALANTVVVLDFETTGLSPNQGDRAIEIGAVKLENGV
IVDRFQKLMNPGFRVSSFIANYTGITNAMLMGADDCATVMHEFADFIQGCNLVAHNASFD
QRFLDAELDAIQRDYDGTFACSLLVSRRLTQEAPSHKLGELVAYHQIDNDGVFHRALADA
EVTASLWQVLLDTLESDYAIKSPDFSLMQKIAKTPKGSIVQFLKKQG
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
gtggtatcattgccgactaattatatgacttggaaatatttcgtgcctttaagctcttct
aaaaacccagccgcgcttgctaatactgttgttgttctcgatttcgaaaccacgggttta
tctccaaaccaaggcgatcgcgccatagaaattggtgcggtgaagctagaaaatggcgtt
attgttgatcgctttcaaaaattgatgaatcctggttttagagtaagctcgttcattgcg
aattacactggcattaccaatgccatgctgatgggagcggatgattgtgccacggtcatg
cacgagtttgcggacttcattcaagggtgtaatttagtggctcataatgcctcgtttgat
cagcgttttttagatgcagagcttgacgcgattcagcgagattatgatggaacgttcgcg
tgttcattattggtatcaagacggctgactcaagaagcaccatcgcataagttgggagag
ttagtggcttatcatcaaatcgataatgatggtgtgttccacagagcgttagccgatgcc
gaagtgacggcttcattatggcaagtgctgttagataccctagaaagcgattatgcgatt
aaaagccctgatttttcattaatgcaaaaaatcgccaaaaccccaaaagggtcaatcgtt
caatttttaaagaaacaaggctaa
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