Aliivibrio salmonicida: VSAL_II0438
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Entry
VSAL_II0438 CDS
T00782
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vsa
Aliivibrio salmonicida
Brite
KEGG Orthology (KO) [BR:
vsa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vsa03016
]
VSAL_II0438 (rnb)
Enzymes [BR:
vsa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VSAL_II0438 (rnb)
Transfer RNA biogenesis [BR:
vsa03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VSAL_II0438 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
Rho_RNA_bind
S1CSD-TOTE-2
CSD
Motif
Other DBs
NCBI-ProteinID:
CAQ81192
UniProt:
B6ER62
LinkDB
All DBs
Position
2:complement(494598..496613)
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AA seq
671 aa
AA seq
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MFQDNPLLAQLKQQIQEKLPKKEGTIKATDRGFGFLESDDKKKSVFIPPAQMKKVMHGDR
VIALIRTENDKDQAEPDQLVEQSVTRFIGRIQMFKKRLQVMPDHPSLKNAIKAKTRKGVN
PETLNEGDWVVAELTQHPLKGDDGFLCDITHKITDTDDKIAPWWVTLAQNDLPNSEPKGI
EHWEIKDDADLVRVDMTETPFVTIDGSSTKDMDDALYIKKQDNGSFELTIAIADPTAYIT
PDDEMDKVARQRGYTIYLPGRNIPMLPRDLSDELCSLIENEQRPAICCTVIVDAEGTIQE
YTINFYAATIKSHARLSYDNVSDFLETGHCETWAPSEIIAQVVTELHEFAQARTTWRQTH
AVIFPDRPDYRFELSEDNDVVAIHADTRRCANKLVEEAMVTANICAGKTLRNTFNMGVFN
SHAGIKLDKFKDVVEIVNQLEGVEFTEEQIATLEGFSELRRLLGSQPTSYLDARIRKYQT
YSETGNEPLPHYAMGLDIYATWTSPIRKYSDMINHRMLKAHILGKEPVQRPDDIVGEELA
LSRRYHRMAERNVSDWLYCRTLACEVEKETQYTAEIFDINRAGMRVRLIENGAAAFIPGS
LIVDNKERIECNGDQGTVSIDKHETFKLGDQLQVTLAEVKEETRNIVAKPVQAFPAPVVE
ETEIETENPSA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccattacttgcgcaattgaagcagcaaatacaagaaaaattgcct
aaaaaagaaggcacaattaaagcaaccgaccgtggttttggcttcttagaatcagatgac
aagaaaaaaagcgtctttattccaccagcacaaatgaaaaaagtgatgcatggtgacaga
gtcattgctcttattcgtactgaaaatgacaaagaccaagcagaaccagatcaacttgtt
gaacaatcagttactcgatttattggccgcattcagatgtttaaaaaacgtctacaggta
atgcctgatcaccctagcctaaaaaatgcaataaaagcaaaaacacgtaaaggtgtaaat
ccagaaaccttaaacgaaggtgattgggttgttgctgagttaacacagcacccattaaaa
ggagatgacggctttctatgtgacatcacccataagatcactgacaccgatgacaaaatc
gcgccttggtgggtaactcttgctcaaaatgatttaccaaattcagaacctaaaggcatt
gaacattgggaaattaaagacgacgctgatttagttcgtgtcgatatgaccgaaacacca
tttgtaaccattgatggttcatcaaccaaagacatggatgatgccctttatattaagaaa
caagacaacggttcttttgaactgactattgcgattgccgatcctaccgcttatatcact
ccagatgatgagatggataaagtggcacgtcagcgtggttatactatttatcttcctggt
cgcaatataccaatgctaccaagagatctaagtgatgagttatgttcattaatcgaaaat
gaacaacgccctgcgatttgttgtaccgtgattgttgatgcagaaggcaccattcaagaa
tacaccattaacttctacgccgcgacgattaaatctcacgcacgcttgtcttacgataat
gtgtctgatttccttgaaacaggccattgtgaaacttgggcaccaagtgaaatcatcgct
caagtagttactgaactgcatgaatttgcacaagctcgtactacatggcgtcaaacgcat
gctgttatctttcctgatcgcccagattatcgctttgaattaagtgaagacaatgatgtt
gttgcgattcatgccgatacgcgtcgctgcgcgaataagctagtagaagaagcaatggtt
actgcgaacatctgtgcaggtaaaacattacgtaatacctttaacatgggcgtatttaac
tcacatgctggtattaaactcgataagtttaaagacgttgttgagattgtaaaccaatta
gaaggcgttgaatttactgaagagcaaatagcaacactggaaggtttcagtgaactacgc
cgtcttttaggtagccaaccgacgtcttaccttgatgcacgtattcgtaaataccaaact
tacagcgagacgggtaacgaaccccttcctcattatgcaatgggtcttgatatctacgcg
acgtggacatcaccaattcgtaaatacagcgatatgattaaccatcgcatgcttaaggct
catatcttaggaaaagaacccgtacagcgccctgatgatatcgtcggtgaagaattggcc
ctaagccgtcgttaccatcgaatggctgaacgtaatgtgagtgattggctatattgccga
acattggcatgtgaagttgaaaaagagacgcagtatacggctgaaatttttgatattaat
cgtgcaggtatgcgtgttcgtttaattgaaaatggtgccgccgctttcattcccggttcg
ttaattgttgataacaaagaacgcattgaatgtaatggcgatcaaggaacggtttcaatc
gataaacatgaaacctttaagcttggtgatcaacttcaagttaccttagctgaagtaaaa
gaagagactcgtaatatagttgcaaaaccagtgcaagccttccctgctcctgttgttgaa
gaaacagaaatagaaacagaaaatcctagcgcttaa
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