Aliivibrio salmonicida: VSAL_II0439
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Entry
VSAL_II0439 CDS
T00782
Symbol
deaD
Name
(GenBank) cold-shock DEAD box protein A (ATP-independent RNA helicase)
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vsa
Aliivibrio salmonicida
Pathway
vsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VSAL_II0439 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsa03019
]
VSAL_II0439 (deaD)
03009 Ribosome biogenesis [BR:
vsa03009
]
VSAL_II0439 (deaD)
Enzymes [BR:
vsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VSAL_II0439 (deaD)
Messenger RNA biogenesis [BR:
vsa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VSAL_II0439 (deaD)
Ribosome biogenesis [BR:
vsa03009
]
Prokaryotic type
rRNA helicases
VSAL_II0439 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CAQ81193
UniProt:
B6ER63
LinkDB
All DBs
Position
2:496944..498869
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AA seq
641 aa
AA seq
DB search
MSETITEFRQLALEETLLSALDEMGFVAPTPIQAESIPLLLAGRDALGKAQTGTGKTAAF
SLPLLNKINLKQHNPQAIIMAPTRELAIQVAAEVKNLGRNIKGLKVLEIYGGASIVDQMR
ALSRGAHIVVGTPGRVKDLLNRDRLNLGEVHTFILDEADEMLKMGFVDDVTWILEKAPET
AQRILFSATMPPMVKTIVDRYLRDPARVDVAGTNNTVEQVTQNFWIVKGVEKDEAMSRLL
ETEEIDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKRGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMVEIELPHRDQVAEARLAVLGAELAADKEFVALEAFSDLITKLQETLEVDAST
IAAMLLKRQQGKRPLFYKGPDPMIAAVERSKNRRPERGDRGDRPERGDRPERGDRPDRGE
RRQYNNDDFDTYQLEVGRDQGVQVKDIVGALANELGFTKGAIGAIKLAPGHTYVQLPKKM
SSDVASKLKQLRIRQNEVKAVVVEGVDLTIDRRPRTGGGAGDSAGAGAGRGGYRGNREGG
AGAARGGERRFDRNKGGDHRGSHRGERAPGASRAPRTPRED
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaactattactgaatttcgccaactggctttagaagaaactttattatctgct
cttgatgaaatgggctttgttgctccaacaccaattcaagcagaatcaattcctctatta
ttagctggtcgtgatgcacttggtaaagcacagacaggtactggtaaaacagctgctttc
tctttgcctcttttaaacaaaatcaaccttaagcaacataacccacaagcaatcatcatg
gctccaacgcgtgaacttgctattcaggttgctgctgaagttaagaatcttggtcgtaac
atcaagggtcttaaagttttagaaatctacggtggtgcttctatcgttgatcaaatgcgt
gccctaagtcgtggcgcacacattgttgttggtactcctggtcgtgttaaagatttactt
aaccgtgaccgtctaaaccttggcgaagttcatacgttcatccttgatgaagccgatgaa
atgctaaaaatgggttttgttgatgatgtgacttggattcttgaaaaagcgccagaaaca
gctcaacgtatcctgttctctgcaactatgccaccaatggttaagacaattgttgaccgt
tacctacgtgatcctgctcgtgttgatgttgctggtactaacaatactgttgaacaagta
acgcaaaacttctggattgttaaaggcgtagaaaaagacgaagcaatgtctcgtctactt
gaaactgaagaaattgatgcatcaatcgtattcgttcgtactcgtcaagatacagagcgt
ctagctgattggttatctgctcgtggctttaaagctgctgcattgcacggtgatattcct
cagtctctacgtgagcgtactgttgaccatatcaaacgcggcgttatcgatatcctagtt
gcaacagatgttgttgctcgtggtcttgatgttcctcgtattacacacgtatttaactac
gacatcccattcgatgttgagtcttacatccaccgtatcggccgtactggtcgtgctgga
cgtaaaggtaaagcgattcttttagttcgcacaaaccaaattcgtatgcttcgtactatt
gaacgtgtaactaaatcttcaatggtagaaatcgaacttccacatcgcgatcaagttgca
gaagctcgtctagcggttcttggtgctgaattagcagcagataaagaattcgttgcacta
gaagcattctctgacttaatcactaagcttcaggaaactctagaagttgatgcatcaaca
attgctgcaatgcttcttaagcgtcaacaaggtaagcgtcctttattctataaaggtcca
gatccaatgatcgcagcagtagaacgttcgaaaaatcgtcgtcctgagcgcggtgatcgt
ggtgaccgtcctgaacgtggtgaccgtcctgaacgtggtgaccgtcctgaccgtggcgaa
cgtcgtcaatacaacaatgacgatttcgatacgtaccaattagaagttggtcgtgatcaa
ggcgttcaagttaaagacatcgtaggtgctctagctaacgaacttggtttcactaaaggt
gctatcggtgcaatcaaacttgctccgggtcacacatacgtacagcttcctaagaaaatg
tcttctgacgttgcaagcaagcttaagcaattacgtattcgtcaaaacgaagtgaaagcg
gttgttgttgaaggcgttgacctaacaattgatcgtcgtcctcgtactggcggtggcgct
ggtgatagcgctggtgctggtgcaggccgtggtggttaccgtggcaatcgcgaaggcggt
gctggtgcagctcgtggtggcgaacgtcgttttgaccgcaacaaaggtggcgatcaccgt
ggtagtcaccgtggcgaacgagctccaggcgcaagccgtgctccacgcacacctcgtgaa
gactaa
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