Vibrio scophthalmi: VSVS12_00012
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Entry
VSVS12_00012 CDS
T04650
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
vsc
Vibrio scophthalmi
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vsc03021
]
VSVS12_00012
Transcription machinery [BR:
vsc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VSVS12_00012
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
UCR_14kD
KORA
HTH_10
SpoIIID
AAA_13
Motif
Other DBs
NCBI-ProteinID:
ANS83864
UniProt:
A0A1B1NJL7
LinkDB
All DBs
Position
1:complement(10517..11374)
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AA seq
285 aa
AA seq
DB search
MTNQVYAMATVSQDSLDSYIRSVNSYPMLTPDEERGLAERLHYNSEIEAAKGLILSHLRF
VVHVARGYSGYGLPMADLIQEGNIGLMKAVKRFNPEVGVRLVSFAVHWIKAEIHEYVLRN
WRIVKVATTKAQRKLFFNLRKSKKRLGWFNNGEVETVARELGVEPSEVREMESRLAAQDP
TFEFSADDDDTGTSITAPMLYLEDKASDVAENVEAANWEAHTNNRLSLALASLDERSQNI
VRSRWLVDNKATLQELAENYGVSAERIRQLEKNAMKKLKLAVGEM
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgactaaccaagtgtatgcaatggctacagtttcccaagatagcttagatagctacatt
cgctcagtgaacagctatccaatgctgacacctgacgaagagcgtggactggctgagcgt
ttgcattacaacagcgaaattgaagcggcgaaaggcttgatcctttcacatctgcgcttc
gttgttcacgtcgctcgcggctactcaggttatggtttgccgatggcagatctaattcaa
gaaggcaacatcggtctgatgaaggcggttaagcgttttaacccggaagtcggggtgcga
cttgtctctttcgctgtgcactggattaaagctgaaatacatgagtatgtattacgcaac
tggcgtatcgtgaaagtggcgacgacgaaggcgcaacgtaaactgttctttaatctacgt
aagtcgaaaaaacgtttaggttggttcaataacggtgaagttgaaacggtagcacgtgag
cttggtgttgagccctctgaagtgcgcgaaatggaatctcgtctcgcggcgcaggatcct
acgtttgaattcagtgctgatgatgatgacaccggtacctcaattaccgctccgatgctt
tatcttgaagataaagcttccgatgtggcggagaatgtggaagcggcgaactgggaagca
cacaccaataatcgtctgagccttgccttagctagcttggatgagcgcagtcaaaatatc
gttcgctcacgttggttggtagacaataaagcgacgctacaagaacttgcagaaaactac
ggcgtatcagcagagcgcattcgccaactagaaaagaatgcgatgaaaaaactgaagtta
gctgtcggcgaaatgtag
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