Vibrio scophthalmi: VSVS12_00070
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Entry
VSVS12_00070 CDS
T04650
Symbol
recQ
Name
(GenBank) DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vsc
Vibrio scophthalmi
Pathway
vsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VSVS12_00070 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsc03019
]
VSVS12_00070 (recQ)
03400 DNA repair and recombination proteins [BR:
vsc03400
]
VSVS12_00070 (recQ)
Enzymes [BR:
vsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VSVS12_00070 (recQ)
Messenger RNA biogenesis [BR:
vsc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VSVS12_00070 (recQ)
DNA repair and recombination proteins [BR:
vsc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VSVS12_00070 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
SKI
Motif
Other DBs
NCBI-ProteinID:
ANS83911
UniProt:
A0A1B1NJU0
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All DBs
Position
1:complement(66812..68650)
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AA seq
612 aa
AA seq
DB search
MTSTLLAQPDDEITVTAQSVLEQVFGYQQFRSGQEQVIEAAIQGKDSLVIMPTGGGKSLC
YQVPALVREGLTLVISPLISLMKDQVDQLKADGVAAECINSSMPREELISVYNRMNSGAL
KLVYVSPERVLMRDFIERLQGVLLSMIAVDEAHCISQWGHDFRPEYASLGQLKHYFPHVP
FMALTATADDATRNDIVTRLQLVEPLNYLGSFDRPNIRYTLLEKHKPVSQIIRYLETQKG
HCGIIYCGSRKKVEMVTEKLCNNHIRAASYHAGMDADERAYVQEAFQRDDIQIVVATVAF
GMGINKPNVRFVAHFDIPRNIESYYQETGRAGRDGLPAEAVMLYDPADISWLRRMLDEKD
EGPQKQVEAHKLNAMSAFAEAQTCRRQVLLNYFGEYRDKPCGNCDICLDPPKHFDATQEA
QKALSCVYRVNQSFGIGYVVEVLRGMQNIRIREQGHDKLSTYGLGRDHSHDYWVSVFRQL
IHKGLLFQNITRNSTLQLTEEARPLLRGEMTLELAVPRLDTAARAAKSDKLTSKNYDKKL
FAKLRKLRKSIADEDGLPPYVVFSDATLIDMAEILPTSYGEMLAVNGVGQRKLEKYADPF
LDLIQEHITQHG
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgacacttttagcccaacctgacgatgagataactgtcaccgcacaaagcgtg
ctggaacaggtgtttggttatcaacaattccgttcaggacaagagcaagtgattgaggcg
gcaattcaaggtaaagatagccttgtgatcatgccgacaggcggtggtaagtcactgtgt
tatcaagtgccagccttggtgcgagagggcttaaccttggtgatatcaccattgatctct
ttgatgaaagaccaggttgatcagttaaaagcggatggggttgcggcagaatgtattaac
tcgagcatgccgcgcgaagagctgatttcagtctacaaccgcatgaactctggtgctctc
aagttagtctatgtgtcaccagaacgtgtactgatgcgtgatttcattgaacgtttacaa
ggcgtgttgctgagcatgattgcggtcgatgaagcgcattgtatttcgcagtggggccat
gattttcgcccggaatacgcttcattaggtcaactcaaacactattttccacatgtaccg
tttatggctttgacggccacggccgatgatgccacacgtaacgatattgtgactcgctta
cagttggttgaaccgctgaattacctcggcagttttgaccggccaaatatccgctacacc
ttgttggaaaaacataagccggtttcacaaatcatccgttatcttgaaacccagaaaggg
cattgcggcattatctattgcggtagccgtaaaaaagtcgaaatggtgacggagaaactg
tgtaacaaccatattcgtgccgccagttatcatgcaggtatggatgccgatgagcgcgct
tatgtgcaagaagcttttcagcgtgatgatattcaaatcgtggttgccactgtggctttt
ggtatgggtattaataagcccaacgtacgctttgtcgcgcattttgatattccacgtaat
atagaatcgtactaccaagaaacaggccgagcagggcgcgatggtctacctgccgaagct
gtgatgctttacgacccggctgatatcagttggctacgccgcatgttggatgaaaaagat
gaagggccacaaaagcaggttgaagcgcataagctcaatgccatgagcgcctttgcggaa
gcgcaaacctgccgtcggcaagtgctgctcaactattttggcgaatatcgtgataagcca
tgtggcaactgcgatatttgtttagacccaccaaaacatttcgatgccactcaggaagcg
caaaaagcattgtcgtgcgtgtatcgcgtgaaccaaagtttcggcattggctatgtggtt
gaagtgctgcgtgggatgcaaaatatccgtattcgcgaacaagggcacgataaactctcg
acctatggtcttggccgcgatcatagccacgattattgggtaagtgtttttcgtcagcta
attcataaaggcttgttattccaaaatatcacccgtaactcaaccttgcagctgaccgaa
gaagcacggccgttgttgcgtggtgagatgacgcttgagttggcggtaccgcgtttagat
accgcagcccgcgcagcgaagtcagacaaattgaccagcaagaattacgataagaagctg
ttcgctaaattacgcaaactacgtaaatcgattgctgatgaagatggtttaccaccttat
gttgttttcagcgatgccaccttaattgatatggcggagatcttgccaacttcttatgga
gagatgttggcagtaaatggcgtgggtcaacgtaagttagagaaatacgcggatccattc
ctcgatttaatacaggaacacattactcagcatggttaa
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