Vibrio scophthalmi: VSVS12_00121
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Entry
VSVS12_00121 CDS
T04650
Symbol
dpo1
Name
(GenBank) DNA-directed DNA polymerase
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vsc
Vibrio scophthalmi
Pathway
vsc03030
DNA replication
vsc03410
Base excision repair
vsc03420
Nucleotide excision repair
vsc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VSVS12_00121 (dpo1)
03410 Base excision repair
VSVS12_00121 (dpo1)
03420 Nucleotide excision repair
VSVS12_00121 (dpo1)
03440 Homologous recombination
VSVS12_00121 (dpo1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vsc03032
]
VSVS12_00121 (dpo1)
03400 DNA repair and recombination proteins [BR:
vsc03400
]
VSVS12_00121 (dpo1)
Enzymes [BR:
vsc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VSVS12_00121 (dpo1)
DNA replication proteins [BR:
vsc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VSVS12_00121 (dpo1)
DNA repair and recombination proteins [BR:
vsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
VSVS12_00121 (dpo1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VSVS12_00121 (dpo1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ANS83957
LinkDB
All DBs
Position
1:complement(128224..131025)
Genome browser
AA seq
933 aa
AA seq
DB search
MARIPDNPLILIDGSSYLYRAFHAYPGTMSNGDIPTNAVYGVVNMLRSMMRQFASDRIAV
IFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISISGVEADDVIGT
LAHQASQQGIPVLISTGDKDMAQLVDENVTLINTMTNVVLDREGVIEKFGIPPELIIDYL
ALMGDKVDNIPGVPGVGDKTATALLQGIGSMEKLYQNLDDIAPLGFRGSKTMAKKLEDNK
ENALLSYQLATIKLDVEMEFKPEQLVKEQPNTDELIKLYGQLVFKSWLNELLEGGTGVVE
AIEKSGAAVPSAPSASENQVEIDRSPISIDRSQYETILDQERFNHWLEKLKASDVFAFDT
ETDSLDYMVANLIGVSFATEEGVAAYVPVAHDYLDAPQQLDRDWVLEQLKPLLEDDNQAK
VGQNLKYDASIVARYGIEMRGIKFDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQV
AGKGKKQLTFNQIDLEQASPYAAEDADVTLRLHHRLNESLAKDDKLNAIYHEIEMPLVPV
LSRIERTGVLIDDMKLSAQSQEIAVRLDELEQKAYELAEQEFNMNSPKQLQALLFEKMGL
PVIKKTPSGTPSTNEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPETGRVH
TSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFIAPHGYKILAVDYSQIELRIMAH
LSGDKALLEAFREGKDIHAATAAEIMGTTIDLVSSEQRRRAKAVNFGLIYGMSAFGLAKQ
LGIPRGEAQDYMNKYFERYPGVMQYMEDTRSAASEQGYVETIFGRRLHLPEIQSRNGMRR
KAAERAAINAPMQGTAADIIKKAMLLVDEWIEKEGDGRVKLLMQVHDELVFEVQETALAE
IETKVQELMESAATLAVPLIAEAGHGDNWDQAH
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtatcccagataacccgttaattctgatcgacggttcttcctatctataccgt
gcattccatgcttacccaggcaccatgagtaatggtgatattccaaccaatgcggtttat
ggcgtggtaaacatgctgcgtagcatgatgcgtcaatttgcatcggatcgtatcgcggtg
atctttgatgcgaaaggaaaaaccttccgtgatgatatgtatccggaatacaaggcaaat
cgacctccgatgcctgatgatcttcgctgtcagatcgagcctctgcacaatgttattcgc
gctatgggcctgccattgatctcgatctcgggcgtcgaagcagatgacgtaatcggcaca
cttgcacaccaagcatcgcagcaggggatccctgttttgatcagcactggcgataaagat
atggcgcagctggtggatgaaaatgtcaccttgatcaataccatgaccaatgtggtgctg
gatcgtgaaggcgtgattgaaaaatttggtattccacctgaactgatcatcgattacctc
gcattgatgggtgataaagtggataacattcctggtgttccgggggtgggtgacaaaacg
gccacggctttgttgcaaggcattggtagcatggagaagctgtatcagaatcttgatgat
attgcgccacttggcttccgtggttcgaaaaccatggccaaaaaactggaagataacaaa
gaaaatgcattgctctcttaccagctcgcaaccatcaagcttgatgtggaaatggagttc
aagcctgagcagttagtgaaagaacaaccgaacactgatgagttgatcaaactgtatggt
caattggttttcaaatcatggctaaacgagctacttgaaggtggcacaggtgtggttgaa
gcgatagagaagagtggtgcagcggtcccatcagcaccttcggcaagcgaaaaccaagtg
gaaattgaccgttcaccgatcagcattgaccgtagccaatatgagaccattcttgatcaa
gagcgctttaaccattggcttgaaaagcttaaagcgagcgacgtgtttgcttttgacacc
gaaactgacagcttagattacatggtcgcgaatctgataggcgtctcttttgctaccgaa
gaaggcgtagccgcttatgtaccagtggcgcatgactatttagatgctccacaacagctt
gatcgtgattgggtattggagcaattaaagcctttgctagaagatgacaatcaagccaaa
gtaggtcaaaacctcaagtacgatgcaagcatcgttgctcgttatggcattgagatgcgt
ggcattaaattcgataccatgttggcttcctacgtatataacagcgtaggtggtaagcat
gatatggatagcttggcactgcgtttcttgcagcatagctgtatctcatttgaacaagtg
gcaggtaagggcaagaaacaactgacctttaaccaaatcgaccttgagcaagcgtcacct
tatgccgcagaagatgctgatgtgacattgcgtttgcaccaccgtttaaatgaaagccta
gcaaaggatgacaaactcaacgcgatttatcatgaaattgaaatgcctttggtgccggtt
ttatcccgcattgaacgtactggcgttttgattgatgacatgaagttgtctgcacagtcg
caagaaattgctgtgcgcttggatgagttagagcaaaaagcgtatgaactggctgagcaa
gaattcaatatgaattcaccaaagcagttgcaagctttgttgtttgaaaaaatgggccta
cctgttattaagaaaacgccatcaggcacaccttcaaccaatgaagaagtgttgcaggaa
ttggcattagactatccattaccaaaattgattttggaatatcgtggtttggctaagctt
aaatcgacctataccgataagctgccaaaaatgatcaatccagagacgggtcgtgtgcat
acttcttaccaccaagcggtaaccgcgacgggccgtctttcttcgaccgatccaaacctg
cagaatataccaatccgtaatgaagaaggacgtcgtattcgtcaggcctttattgctccg
catggttataagattctcgcggtcgactattcccaaattgaattgcgtattatggcgcac
ctttcaggtgacaaagcgttgcttgaggcattccgtgaaggtaaggatatccacgcggca
accgcggcagagattatgggaaccacgattgatcttgtttcatcagagcaacgtcgccgt
gcgaaagcagtgaactttggattgatttacggcatgagtgcatttggtctggctaagcaa
cttggtattccacgcggcgaagcgcaagactacatgaacaaatatttcgagcgttaccct
ggtgtgatgcaatatatggaagacacacgtagcgcggcttcagagcaaggctatgtggaa
accatctttggccgtcgtctacacctacctgaaattcagtcacgtaatggtatgcgtcgt
aaagcagccgaacgtgcggcaatcaacgcaccaatgcagggaactgcagcggatattatt
aaaaaagcaatgttgctggttgatgagtggattgaaaaagaaggcgatggtcgtgtgaaa
ttgcttatgcaagtgcacgatgaactcgtatttgaagttcaagagacggcactggccgaa
attgaaacaaaagtacaagaattgatggaatcggcggccacacttgcggtgccgctaatt
gctgaagcgggtcacggtgataactgggatcaggcacactag
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