Vibrio scophthalmi: VSVS12_00163
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Entry
VSVS12_00163 CDS
T04650
Symbol
thiC
Name
(GenBank) Phosphomethylpyrimidine synthase
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
vsc
Vibrio scophthalmi
Pathway
vsc00730
Thiamine metabolism
vsc01100
Metabolic pathways
vsc01240
Biosynthesis of cofactors
Module
vsc_M00127
Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
VSVS12_00163 (thiC)
Enzymes [BR:
vsc01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
VSVS12_00163 (thiC)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-ProteinID:
ANS83999
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All DBs
Position
1:complement(175349..177286)
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AA seq
645 aa
AA seq
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MSSRKQARLEAKQFIDTLSVQPYPNSRKTYVEGSRPDIRVPMREITLADSLIGGTKDAPI
FEPNEPMRVYDTSGVYTDPEHDIDLYKGLPKLRELWIEERADTQLLDDVSSVYAKERLDD
ETLDDLRYGNLPNIRRAKAGQCVTQLHYARQGIITPEMEYIALRENMGRARYSDEMLNQQ
HPGQNFGANLPKDITAEFVRKEVAEGRAIIPSNINHPESEPMIIGRNFLVKVNANIGNSS
VSSSIEEEVEKLVWSTRWGGDTVMDLSTGRNIHETREWILRNSPVPIGTVPMYQALEKVN
GVAEDLNWEVMRDTLIEQAEQGVDYFTIHAGLLLRYVPMTAKRVTGIVSRGGSIIAKWCL
AHHQESFLYTHFREICEICAQYDVALSLGDGLRPGSIADANDEAQFAELRTLGELTKVAW
EYDVQVIIEGPGHVPMHMIKENMDEQLKHCHEAPFYTLGPLTTDIAPGYDHITSGIGAAM
IGWYGCAMLCYVTPKEHLGLPNKEDVKTGLITYKLAAHAADLAKGHPGAQIRDNALSKAR
FEFRWEDQFNLSLDPETARAYHDETLPQESGKVAHFCSMCGPKFCSMKISQEVREYAKDT
KQVAADQAISIKMLDDPLEGMKQKSAEFRATGSELYHPAVASEAE
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtcgcaagcaagcaagactggaagctaaacaatttatagatactctttcggtg
caaccgtacccaaactctcgaaaaacttatgttgagggctctcggcctgatatccgtgtt
cctatgcgagaaatcaccttggcagatagtttgattggcggcacaaaagacgcgccgatt
ttcgagccgaatgaaccaatgcgcgtttatgatacctctggtgtttataccgatcctgag
catgacattgacctatataagggtcttcctaaactgagggaattatggattgaggaacgt
gctgatacgcagcttttggatgatgttagctcggtatatgcgaaagagcgcttggacgat
gaaaccctagacgacctgcgctatggcaatctacctaatatacgtcgtgcgaaagcagga
caatgcgtaacacagttgcattatgcacgccaaggcatcattacccctgagatggaatat
atcgcattgcgcgaaaatatggggcgcgctcgatatagtgatgaaatgcttaaccagcag
catccagggcagaattttggggctaacttacccaaagatattaccgctgagtttgtacgt
aaggaagtcgctgaagggcgtgcaattatcccgtcgaatattaaccatccagaatctgaa
ccgatgattattggccgcaacttcttagttaaggtcaatgctaatattggtaattcatcg
gtgagttcttcaatcgaagaagaagttgaaaagctagtttggtccactcgttggggtggc
gataccgtgatggacttgtctacagggcgaaatattcatgaaactcgagagtggatattg
cgtaacagcccggtaccgatcggcactgtgcctatgtatcaagctctagaaaaagttaac
ggtgtcgctgaagatcttaattgggaagtgatgcgcgatacgcttatcgaacaagcggag
cagggagttgattactttactattcacgccggtttgctattgcgttatgtgccaatgacg
gccaaacgtgtcactggtattgtctcccgtggtggttccatcattgcgaaatggtgcctt
gctcaccatcaagaaagtttcctctatacccacttccgcgaaatttgcgaaatctgtgct
cagtatgacgtggcgctttctttaggtgatggtctacgaccaggttcgattgctgacgcc
aacgatgaagctcaatttgctgagctgcgcacattgggggagttaactaaggttgcatgg
gagtacgatgtgcaggtgatcatcgaaggccctggtcatgtaccaatgcatatgattaag
gaaaacatggatgaacagctcaagcattgccatgaagcacctttttacaccttaggccca
ttaacgacagatatcgctcctggttatgaccatattacttccggcattggtgcagcgatg
atcggctggtatggctgcgcgatgttgtgctatgtaacgccaaaggagcacttgggatta
ccaaataaagaagatgtgaaaacagggttgatcacatacaagttagcggctcatgcggct
gacttagccaaaggtcatccaggcgcgcaaattcgtgataatgctttatcgaaagcgcgc
tttgaattccgttgggaagaccaatttaatctctctctcgatcctgaaactgctcgtgct
taccatgacgaaacgttaccgcaagagtccggtaaagtagcccatttctgctctatgtgt
ggccctaaattctgctccatgaagatttctcaagaagttcgagagtatgccaaagatacc
aaacaagtcgcagctgatcaggctatctccataaaaatgctggatgatccacttgagggg
atgaaacagaaatctgcagagtttagagcgacgggctctgagttgtatcacccagcggtt
gcatctgaggcagagtaa
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