Vibrio scophthalmi: VSVS12_00333
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Entry
VSVS12_00333 CDS
T04650
Symbol
mutM
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
vsc
Vibrio scophthalmi
Pathway
vsc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VSVS12_00333 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsc03400
]
VSVS12_00333 (mutM)
Enzymes [BR:
vsc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
VSVS12_00333 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
VSVS12_00333 (mutM)
DNA repair and recombination proteins [BR:
vsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VSVS12_00333 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_IS1595
Zn_ribbon_6
HscB_4_cys
DUF7575
PA_Ig-like
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
ANS84150
LinkDB
All DBs
Position
1:354516..355322
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AA seq
268 aa
AA seq
DB search
MPELPEVEVSRMGISPHLVGETIRSLTFRTPKLRWDIPAELKQLEGQVIRDIRRRAKYLI
IETDAGCAIVHLGMSGSLRVLDAEFPPSKHDHVDLLLTNGKLLRYNDPRRFGAWLFSQDG
EHAVLSHMGPEPLTDDFNAEYMLQKALNKRVAVKQFIMDNKVVVGVGNIYASESLFSAKV
HPTRAAGSLTLTEWDSLVADIKQVLTTSIKQGGTTLKDFAQADGKPGYFAQELQVYGKAG
ESCPNCGEEIEALKIGQRNTFFCSHCQV
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgaattaccagaagttgaagtgagtcggatgggaatttcgcctcatttggtcgga
gaaacgattcgaagtctgacttttcgtacgcctaagctacgttgggatattcctgctgaa
ctgaaacaactggaagggcaggtgattcgtgatattcgccgtcgggctaaatacttaatc
attgaaactgacgcgggttgtgcgattgtacatttaggtatgtctggctcgctacgagta
ctagatgccgagtttccgccgagcaaacatgatcacgttgatttactgttaaccaatggt
aagttactacgctacaacgatccacgtcgttttggtgcttggctgtttagccaagatggc
gaacatgctgtacttagccatatggggccagagcctctgacggatgattttaatgcggaa
tatatgctgcaaaaagcattgaataaacgcgttgcagtaaagcagtttattatggataac
aaagttgttgttggtgtcggcaacatttacgccagtgaatctttgtttagcgcgaaagtg
catcccactcgcgcggcaggcagtttaacactcactgagtgggatagtttagtcgctgat
atcaaacaggtgttaaccacctcaatcaagcaaggcggcacaaccttaaaagattttgct
caagccgacggtaaaccgggctactttgcacaagagctgcaagtgtatggcaaagctggc
gagtcttgcccaaattgcggtgaagagattgaagcgctcaagatcgggcaaagaaatacg
tttttttgttcgcactgtcaggtttga
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