Vibrio scophthalmi: VSVS12_00362
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Entry
VSVS12_00362 CDS
T04650
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
vsc
Vibrio scophthalmi
Pathway
vsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VSVS12_00362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsc03019
]
VSVS12_00362
03110 Chaperones and folding catalysts [BR:
vsc03110
]
VSVS12_00362
03029 Mitochondrial biogenesis [BR:
vsc03029
]
VSVS12_00362
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vsc04147
]
VSVS12_00362
Enzymes [BR:
vsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
VSVS12_00362
Messenger RNA biogenesis [BR:
vsc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
VSVS12_00362
Chaperones and folding catalysts [BR:
vsc03110
]
Heat shock proteins
HSP60 / Chaperonin
VSVS12_00362
Mitochondrial biogenesis [BR:
vsc03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
VSVS12_00362
Exosome [BR:
vsc04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
VSVS12_00362
Exosomal proteins of other body fluids (saliva and urine)
VSVS12_00362
Exosomal proteins of breast cancer cells
VSVS12_00362
Exosomal proteins of colorectal cancer cells
VSVS12_00362
Exosomal proteins of bladder cancer cells
VSVS12_00362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
ANS84179
UniProt:
A0A1B1NKI2
LinkDB
All DBs
Position
1:381959..383605
Genome browser
AA seq
548 aa
AA seq
DB search
MAAKDVKFGNDARIKMLEGVNILADAVKVTLGPKGRNVVLDKSFGSPVITKDGVSVAREI
ELEDKFQNMGAQMVKEVASKANDAAGDGTTTATVLAQAIIAEGLKAVAAGMNPMDLKRGI
DKAVVAAVEQLKELSVECNDTKAIAQVGTISANSDSTVGNIIAEAMEKVGRDGVITVEEG
QALQDELDVVEGMQFDRGYLSPYFINNQEAGSVDLESPFILLVDKKISNIRELLPTLEAV
AKASRPLLIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTV
ISEEIGLDLEKVTLEDLGQAKRIAITKENTTIIDGAGEEAMIQGRVTQIRQQIEDATSDY
DKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALI
RAASKVAGLEGDNEEQNVGIRVALRAMEAPIRQITKNAGDEESVVANNVRAGEGNYGYNA
ATGEYGDMIEMGILDPTKVTRSALQFAASVAGLMITTEAMVTDLPQKESAGMPDMGGMGG
MGGMGGMM
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggctgctaaagacgttaaatttggtaatgacgcacgtattaaaatgctagaaggtgtc
aacattctagctgacgcggtaaaagtaacattgggccccaaaggccgtaacgtagtacta
gacaaatcatttggctcaccagtaatcactaaagatggtgtatctgtagcgcgtgaaatt
gaattggaagataaattccaaaacatgggcgcacaaatggtaaaagaagtggcttctaaa
gcgaatgacgcggcgggcgacggtacgactaccgcaaccgtacttgcacaagcaatcatc
gctgaaggcctaaaagccgttgctgcgggcatgaacccaatggatcttaagcgcggtatc
gataaagcggttgtcgcagcagtcgagcagcttaaagagctttctgttgaatgtaacgac
actaaagcaattgctcaagtgggtacaatctcagcgaactcagattcaaccgtcggcaac
atcattgcagaagcaatggaaaaagtaggtcgtgatggcgttatcacggttgaagaaggc
caagcactgcaagatgagcttgatgtggtagaaggtatgcagtttgaccgcggttacctg
tcaccttacttcatcaacaaccaagaagcgggttctgtggatctagaaagcccattcatc
ctgttggttgataagaaaatttcaaacattcgcgaactgctaccaacccttgaagcagta
gcaaaagcttctcgtccactgcttattattgcagaagatgtagaaggtgaagcactagcg
acgctagtggtaaacaacatgcgtggcatcgtgaaagttgcggctgttaaagcgcctggt
tttggtgaccgtcgcaaagccatgctacaagatatcgctatcctaactggcggtacggtg
atttcagaagagatcggtctagatcttgagaaagtaacgctagaagacctaggtcaagcg
aagcgcattgcgatcactaaagaaaacaccaccatcatcgatggtgcaggtgaagaagcg
atgatccaaggtcgcgtgacgcaaattcgtcaacagattgaagatgcaacttcagactac
gacaaagaaaaactgcaagagcgcgtagcgaaattggctggtggtgttgcggtaatcaaa
gttggcgcagcaactgaagttgaaatgaaagagaagaaagaccgcgtagaagatgcacta
cacgcaactcgcgcagcggttgaagaaggtgtggttgctggtggtggtgtggctcttatt
cgcgcagcatcaaaagtagcgggccttgaaggtgacaacgaagagcaaaatgtcggtatt
cgtgttgctctacgtgcaatggaagctccaattcgtcaaatcactaagaacgctggtgat
gaagagtcagtggttgctaacaacgttcgtgctggtgaaggtaactacggttacaacgca
gcaacgggtgagtacggcgacatgatcgaaatgggtatcctagacccaactaaagtaact
cgctctgcgcttcagtttgcagcatcggttgcgggtctaatgatcacgactgaagcgatg
gtgactgatctaccacaaaaagaaagcgctggtatgcctgatatgggtggtatgggcggc
atgggtggtatgggcggcatgatgtaa
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