Vibrio scophthalmi: VSVS12_00468
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Entry
VSVS12_00468 CDS
T04650
Symbol
vacB
Name
(GenBank) Ribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vsc
Vibrio scophthalmi
Pathway
vsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VSVS12_00468 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsc03019
]
VSVS12_00468 (vacB)
03016 Transfer RNA biogenesis [BR:
vsc03016
]
VSVS12_00468 (vacB)
Enzymes [BR:
vsc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VSVS12_00468 (vacB)
Messenger RNA biogenesis [BR:
vsc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VSVS12_00468 (vacB)
Transfer RNA biogenesis [BR:
vsc03016
]
Prokaryotic type
tRNA degradation factors
VSVS12_00468 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
Rho_RNA_bind
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
ANS84285
UniProt:
A0A1B1NKZ5
LinkDB
All DBs
Position
1:507012..509480
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AA seq
822 aa
AA seq
DB search
MSDQIQNDPFADRESQNYDNPIPSREFILEFLKQAGVPMNRNDLFEALKLQGEEQYEGLR
RRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSTGKDNDIVLPHH
QMKNIIHGDFVLVQPTDNSKRGRKEGRLVRVLEERKTQIVGRFFLEYGYSYVVPDDSRIC
QDILIPNEHKSTARMGNVVVIEITDRGTRSRGMMGQVVEVLGEKMAPGMETQIAIRTHQI
PHEWPEAVDKQIEHLGEEVPEEAKAGRVDLRQLPLMTIDGEDARDFDDAVFCEAKKGGGW
RLWVAIADVSYYVRPETALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTISATGKLSSYKHYEGVMNSHARLTYNKVGAVLDGDEELRQRYAPLVPHLEELHKM
YKVLKSARDNRGAIEFETVETKFIFNAERKIDRIEPVIRNDAHKLIEECMILANIASASL
VEKAKEAALYRIHETPGELRLQGFRDFLGELGLNLGGGLEPSPTDYADLVKQIAERQDKE
LIQTMLLRSMKQAVYSADNCGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKEEGRN
QDRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGDELEGVIA
NVTSFGFFVRLTELHIDGLVHISSLANDYYHFDPVGQRLIGESFGAIYRLGDAVKVKVQA
VNLDDRQIDFALVETSRKLRGEGKTAKKRAVEAQLKAKAKKRAATGGREDRKAKPAIEPT
KAPVKAEAKGEAKKPKVKKARKKKPHSNSKKGKRSSTKSKSE
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaccaaatccaaaacgatccctttgctgatcgtgaatcacaaaattacgacaat
cctattccaagccgtgagtttattctcgagttcttgaaacaggccggcgttccgatgaac
cgcaatgacctgtttgaagcacttaaacttcaaggtgaagagcaatatgaaggcttacgt
cgtcgcctacgagcgatggagcgtgatggtcaattggtctttactcgtcgtcagtgttac
gcattgcctgaaaaactagaaatggtaaaaggctatgtgattggtcataaagacggccat
ggctgggttcgcccagaaggcagtaccggcaaggataacgacatcgtgctgccgcaccac
caaatgaaaaacatcattcacggtgattttgttttggtgcaaccgacggacaactcaaaa
cgtggtcgcaaggaaggccgtttggttcgtgtacttgaagaacgtaaaacgcaaatcgtc
ggtcgcttcttcttagagtatggctactcatacgtagtgccagatgattctcgtatttgc
caagatatcttgatccctaacgagcacaagtctacggcgcgcatgggtaatgtggttgtg
attgaaattaccgatcgcggtacacgttcacgcggtatgatgggtcaagtggtcgaagtg
ttaggtgagaaaatggcgccgggcatggaaacgcaaattgcgattcgcacccaccagatc
ccacacgagtggccagaagcggtcgataaacaaattgaacacctgggcgaagaagtacca
gaagaggcgaaagctggccgtgttgatttgcgccaattgccattgatgactattgatggt
gaagacgcacgagacttcgatgacgcagtattctgtgaagcgaaaaaaggcggcggctgg
cgcttatgggtcgcgattgctgatgtgagctactacgttcgtccagaaaccgcattagat
aaagaagcgattaaccgtggtaactcggtttacttcccttcgcaagttgttcctatgctg
ccagaagtgctttcaaatggtctgtgttctctcaacccgcaagttgatcgcttgtgtatg
gtgtgtgagatgacgatttctgcgacgggtaagctatcgagctataagcactatgaaggt
gtgatgaactcgcatgctcgcctgacctacaacaaagtgggcgcagtattagatggcgat
gaagagttgcgtcaacgttacgcacctttagtaccgcatcttgaagagctacataagatg
tataaagtgctgaaaagtgctcgtgataatcgtggtgcgattgaatttgaaacggttgaa
actaagttcatcttcaacgcagagcgtaagatcgatcgtattgagccggtgattcgtaac
gatgcgcataagctaatcgaagaatgtatgattctggctaacatcgcttcagcatcattg
gtagagaaagctaaagaagccgcgttgtaccgtattcatgaaactccgggtgaactgcgt
ctgcaaggtttccgtgacttcctgggcgagcttggtttgaatcttggcggcggcttagag
ccatcaccaaccgattacgcggacttggtaaaacagattgctgagcgtcaagataaagag
ctgatccaaactatgctgctacgctcaatgaagcaagcggtctacagtgcggataactgt
ggtcactttggcttagcactcaaacgctacgcgcactttacttcaccgatccgtcgttac
ccagacttgctacttcaccgtgcaatcaaatacctgattgcgaaagaagaagggcgtaac
caagatcgctggacaccaaccggtggttaccactattcatttgatgatatggatttctac
ggtgagcaatgttcgatgaccgagcgtcgcgcggatgatgcgacacgtgaagtatcggat
tggctgaaatgtgaatacatgcaagatcacgtcggcgatgagcttgaaggtgtgattgcc
aatgtgaccagttttggtttctttgtccgtctaactgaattgcatatcgatggtttagtg
catatttcgtcactggcgaatgactactatcactttgacccagtaggtcaaagacttatc
ggtgagagcttcggtgctatctatcgtttaggtgatgcggttaaagtaaaagttcaggcc
gtaaatctggatgaccgccaaattgactttgcattagttgaaacaagtcgtaagctacgc
ggcgaaggcaagacggctaaaaagcgtgcggtcgaagctcagcttaaagcgaaagcgaaa
aaacgcgcagcgaccggtggccgagaggatcgcaaagcaaaacctgcgattgagccaacc
aaggcaccagtgaaagctgaagccaaaggtgaagcgaaaaagcctaaggtgaaaaaagcg
cgtaagaaaaaaccgcacagcaattccaaaaagggaaagcgcagtagcactaagagcaag
agcgaatag
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