Vibrio scophthalmi: VSVS12_00504
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Entry
VSVS12_00504 CDS
T04650
Symbol
cpdB
Name
(GenBank) 2',3'-cyclic-nucleotide 2'-phosphodiesterase
KO
K01119
2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:
3.1.4.16
3.1.3.6
]
Organism
vsc
Vibrio scophthalmi
Pathway
vsc00230
Purine metabolism
vsc00240
Pyrimidine metabolism
vsc01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vsc00001
]
09100 Metabolism
09104 Nucleotide metabolism
00230 Purine metabolism
VSVS12_00504 (cpdB)
00240 Pyrimidine metabolism
VSVS12_00504 (cpdB)
Enzymes [BR:
vsc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.6 3'-nucleotidase
VSVS12_00504 (cpdB)
3.1.4 Phosphoric-diester hydrolases
3.1.4.16 2',3'-cyclic-nucleotide 2'-phosphodiesterase
VSVS12_00504 (cpdB)
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Gene cluster
GFIT
Motif
Pfam:
5_nucleotid_C
Metallophos
PGA_cap
Motif
Other DBs
NCBI-ProteinID:
ANS84321
LinkDB
All DBs
Position
1:complement(528738..530789)
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AA seq
683 aa
AA seq
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MSHFEMHLESSYMTFCYISRSENNAIGAKKMKVAVKPLTLAVLGGMLTMAGPAMADTIKL
RIIETTDIHTNVMDYDYYKDSASEKIGLTRTATLVKQARAEVENSVLVDNGDLIQGSPMG
DYMADKGIDAGEVHPVYKAMNQLNYDVGNIGNHEFNYGLEFLAETINDANFPYVSANVFD
KKTGKHYFKPYIIKTHTFKDVDGAEHQIKVGYIGFVPPQIMIWDKKNLEGQVFAKDIKES
AEELIPQMKAEGADVIVAIPHSGVASDPHKSGAENSTYYLADVEGIDAIAFGHSHAVFPG
KGFDNIPGVDNENGTINGVASVMPGRWGSHVGVIDLQLAQKDGKWQVVEGKAEARPIYDG
INKKSLAKADEGMVQALQADHKGTREFVNQPIGKANDVMYSFLSLVQDDPTVQIVNLAQQ
DYVERFIQGDPDLADIPVLSAAAPFKAGGRKDDPSGFTEVESGQLTFRNAADLYLYPNTL
VALKMTGKDVQEWLECSAGQFNQIDINTTAPQSLINWDGFRTYNFDVMDGVNYQVDITQP
AKYDGDCKLVNADAKRIVGLTFQGKPINPDQEFIVATNNYRAYSNKFAGTGSDHIAFDSP
DENRSVIAAYISRVSKEKGEVTPSADNNWTFAPITADKKLDIRFETSPSEKATQFIKDKG
QYPMKQVAIDDVGFAIYQIDLQK
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtcacattttgaaatgcatctagaatctagttacatgacattttgttacattagccgc
agtgaaaataacgctatcggagcgaaaaaaatgaaagtagcagtgaaacctttaacccta
gcagtgcttggtggcatgttgaccatggcaggccctgcaatggcagatacgatcaaactt
cgtattattgaaacaactgatattcacactaacgtgatggattacgattactacaaagac
tcagcctctgagaaaatcggtcttacacgtactgctactttagttaaacaagctcgcgct
gaagttgaaaacagcgtactggttgataatggtgatttgatccaaggtagcccaatgggc
gactacatggctgataaaggcattgatgcgggcgaagttcaccctgtctacaaggcaatg
aaccaactaaactacgatgtgggcaacattggtaaccacgagtttaactacggtctagag
tttctagcagaaaccatcaatgacgcgaacttcccatacgtgagtgctaacgtatttgat
aagaaaaccggcaaacactacttcaagccttacatcatcaaaacacacacatttaaagat
gttgatggcgcagagcatcaaatcaaagtgggttacattggtttcgtgccacctcaaatc
atgatttgggataagaaaaacttagaaggccaagtttttgccaaagatatcaaggaatca
gcagaagagttgatcccacaaatgaaagccgaaggtgctgacgttatcgtggcgattccg
cactcaggtgttgcctctgatccacacaaatcaggcgcagaaaactcgacttactactta
gcagatgttgaaggcatcgatgcgattgcttttggtcactcgcacgcggttttccctggt
aaaggttttgataacattcctggtgttgacaatgaaaacggtaccattaatggcgtagca
tcagtgatgccaggccgttggggtagccatgttggcgtgattgatctgcaattggcacaa
aaagatggtaagtggcaagtcgttgaaggcaaagcagaagctcgccctatctacgatggc
atcaacaaaaagtcgttagctaaagccgacgaaggcatggttcaagcactacaagctgac
cacaaaggtacacgtgaatttgttaaccagccaatcggtaaagcgaatgacgtaatgtac
agcttcctgtctcttgttcaagacgacccaacggtacaaatcgtcaaccttgcacaacaa
gattacgttgaacgctttattcaaggtgacccagatctagctgacattccagtactttct
gctgctgcgcctttcaaagcgggcggccgtaaagatgacccatcaggctttaccgaagtt
gaatctggtcagctaacgttccgtaacgcagcggatctttacctatacccaaatacactg
gttgcattgaagatgaccggtaaagatgtacaagagtggttagagtgttctgcaggtcaa
tttaaccaaatcgacatcaacacaacagcaccacaatctctgattaactgggatggtttc
cgtacttacaactttgatgtaatggatggtgttaactaccaagtggatatcactcaacct
gcaaaatacgacggtgactgtaaactggttaacgcagacgctaaacgtatcgtcggtttg
acgttccaaggtaaaccaatcaacccagaccaagagttcatcgtggcaaccaacaactac
cgtgcatacagcaacaaatttgccggtacgggtagcgaccacattgcgtttgattcacca
gatgaaaaccgctcagtgattgctgcttatatctctcgcgtaagcaaagagaaaggtgaa
gtaacgccaagtgctgataacaactggacatttgcaccaatcacggcggataagaaactt
gatattcgttttgaaacctcgccaagcgaaaaagcaactcagtttattaaagacaaaggt
caatacccaatgaagcaagtcgcaatcgatgatgttggcttcgcgatttaccaaattgat
ctacaaaaataa
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